IL_3R1C_029

3D structure

PDB id

3R1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of GCGGCGGC duplex

Experimental method

X-RAY DIFFRACTION

Resolution

2.05 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3R1C_029 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.0954

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10167.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

55

Unit IDs

3R1C|1|C|C|2
3R1C|1|C|G|3
3R1C|1|C|G|4
*
3R1C|1|D|C|5
3R1C|1|D|G|6
3R1C|1|D|G|7

Current chains

Chain C

RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3')

Chain D

RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3')

Nearby chains

Chain h

RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3')