IL_3R1C_036

3D structure

PDB id

3R1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of GCGGCGGC duplex

Experimental method

X-RAY DIFFRACTION

Resolution

2.05 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3R1C_036 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.0387

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

55

Unit IDs

3R1C|1|I|C|5
3R1C|1|I|G|6
3R1C|1|I|G|7
*
3R1C|1|J|C|2
3R1C|1|J|G|3
3R1C|1|J|G|4

Current chains

Chain I

RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3')

Chain J

RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3')

Nearby chains

Chain Q

RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3')