IL_3R1D_013
3D structure
- PDB id
- 3R1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of GC(8BrG)GCGGCGGC duplex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.45 Å
Loop
- Sequence
- CGG*C(GRB)(GRB)G
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3R1D_013 not in the Motif Atlas
- Geometric match to IL_3ICQ_003
- Geometric discrepancy: 0.1319
- The information below is about IL_3ICQ_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70707.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 70
Unit IDs
3R1D|1|E|C|8
3R1D|1|E|G|9
3R1D|1|E|G|10
*
3R1D|1|E|C|2||A||2_655
3R1D|1|E|GRB|3||B||2_655
3R1D|1|E|GRB|3||A||2_655
3R1D|1|E|G|4||A||2_655
Current chains
- Chain E
- RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3')
Nearby chains
- Chain A
- RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3')
- Chain B
- RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3')
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