IL_3R1L_003

3D structure

PDB id

3R1L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Mg2+ bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

3R1L|1|F|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3R1L_003 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.1969

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

3R1L|1|F|G|46
3R1L|1|F|U|47
3R1L|1|F|U|48
*
3R1L|1|F|A|112
3R1L|1|F|C|113

Current chains

Chain F

Class I ligase ribozyme

Nearby chains

Chain E

5'-R(*UP*CP*CP*AP*GP*UP*A)-3'