IL_3R8N_105

3D structure

PDB id

3R8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3R8N_105 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.2187

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3R8N|1|A|G|450
3R8N|1|A|A|451
3R8N|1|A|A|452
3R8N|1|A|G|453
3R8N|1|A|G|454
3R8N|1|A|G|455
*
3R8N|1|A|C|477
3R8N|1|A|A|478
3R8N|1|A|U|479
3R8N|1|A|U|480
3R8N|1|A|G|481
3R8N|1|A|A|482
3R8N|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16