IL_3R8O_123

3D structure

PDB id

3R8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGACC*GCAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3R8O_123 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3695

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3R8O|1|A|G|1258
3R8O|1|A|C|1259
3R8O|1|A|G|1260
3R8O|1|A|A|1261
3R8O|1|A|C|1262
3R8O|1|A|C|1263
*
3R8O|1|A|G|1272
3R8O|1|A|C|1273
3R8O|1|A|A|1274
3R8O|1|A|A|1275
3R8O|1|A|G|1276
3R8O|1|A|C|1277

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain N

30S ribosomal protein S14