IL_3R8O_125

3D structure

PDB id

3R8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3R8O_125 not in the Motif Atlas

Geometric match to IL_5J7L_059

Geometric discrepancy: 0.0773

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

3R8O|1|A|G|1401
3R8O|1|A|C|1402
3R8O|1|A|C|1403
3R8O|1|A|C|1404
*
3R8O|1|A|G|1497
3R8O|1|A|U|1498
3R8O|1|A|A|1499
3R8O|1|A|A|1500
3R8O|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain V

Transfer RNA; tRNA

Chain X

messenger RNA