IL_3S49_003
3D structure
- PDB id
- 3S49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA crystal structure with 2-Se-uridine modification
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- UAU*A(RUS)A
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3S49_003 not in the Motif Atlas
- Geometric match to IL_3LA5_001
- Geometric discrepancy: 0.0789
- The information below is about IL_3LA5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
3S49|1|C|U|2
3S49|1|C|A|3
3S49|1|C|U|4
*
3S49|1|D|A|13
3S49|1|D|RUS|14
3S49|1|D|A|15
Current chains
- Chain C
- RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')
- Chain D
- RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')
Nearby chains
- Chain A
- RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')
- Chain B
- RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')
- Chain F
- RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')
Coloring options: