IL_3SIV_001

3D structure

PDB id

3SIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hPrp31-15.5K-U4atac 5' stem loop complex, dimeric form

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAUGAG*UGAG

Length

11 nucleotides

Bulged bases

3SIV|1|C|U|36

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn from U4

Broad Annotation

Kink-turn

Motif group

IL_51265.3

Basepair signature

cWW-tSS-tHS-tSH-cWW-L

Number of instances in this motif group

6

Unit IDs

3SIV|1|C|C|33
3SIV|1|C|A|34
3SIV|1|C|A|35
3SIV|1|C|U|36
3SIV|1|C|G|37
3SIV|1|C|A|38
3SIV|1|C|G|39
*
3SIV|1|F|U|47
3SIV|1|F|G|48
3SIV|1|F|A|49
3SIV|1|F|G|50

Current chains

Chain C

U4atac snRNA

Chain F

U4atac snRNA

Nearby chains

Chain D

NHP2-like protein 1

Chain E

U4/U6 small nuclear ribonucleoprotein Prp31