Motif IL_51265.4 Version IL_51265.4 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-9 | 5-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OZB_004 | 2OZB | 0.3009 | 1 | F | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | ntsS | tSH | tHS | cWW | |
| 2 | IL_4LCK_006 | 4LCK | 0.2384 | 1 | Kink-turn from T-box riboswitch | F | T-box leader | C | 6 | G | 7 | A | 8 | G | 10 | A | 11 | G | 12 | * | C | 94 | G | 95 | A | 96 | G | 97 | cWW | ntsS | ntSH | ntHS | cWW |
| 3 | IL_3SIV_001 | 3SIV | 0.0000 | 1 | Kink-turn from U4 | C+F | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW |
| 4 | IL_3SIU_002 | 3SIU | 0.0785 | 1 | Kink-turn from U4 | F | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW |
| 5 | IL_3SIV_003 | 3SIV | 0.0865 | 1 | Kink-turn from U4 | F+C | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGAG*UGAG | 3 |
| CAAUGAG*CGAG | 1 |
| CGAUGAG*CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUGA*GA | 4 |
| GAUGA*GA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn from U4 (3)
- (1)
- Kink-turn from T-box riboswitch (1)
- Basepair signature
- cWW-L-tSH-L-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.17 | Max 0.31
Coloring options: