IL_3T1H_009

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

3T1H|1|A|U|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3T1H_009 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0722

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

3T1H|1|A|G|142
3T1H|1|A|A|143
3T1H|1|A|C|144
3T1H|1|A|A|145
3T1H|1|A|A|146
3T1H|1|A|C|147
*
3T1H|1|A|G|162
3T1H|1|A|C|163
3T1H|1|A|U|164
3T1H|1|A|A|165
3T1H|1|A|A|166
3T1H|1|A|U|167
3T1H|1|A|C|168

Current chains

Chain A

16s rRNA

Nearby chains

Chain T

30S ribosomal protein S20