IL_3T1H_015

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

UUCC*GGA

Length

7 nucleotides

Bulged bases

3T1H|1|A|U|363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3T1H_015 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2505

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3T1H|1|A|U|362
3T1H|1|A|U|363
3T1H|1|A|C|364
3T1H|1|A|C|365
*
3T1H|1|A|G|386
3T1H|1|A|G|387
3T1H|1|A|A|388

Current chains

Chain A

16s rRNA

Nearby chains

Chain P

30S ribosomal protein S16