IL_3T1H_016

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3T1H_016 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.1216

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

3T1H|1|A|G|366
3T1H|1|A|C|367
3T1H|1|A|A|368
3T1H|1|A|A|369
3T1H|1|A|U|370
*
3T1H|1|A|A|384
3T1H|1|A|C|385

Current chains

Chain A

16s rRNA

Nearby chains

Chain P

30S ribosomal protein S16