IL_3T1H_020

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3T1H_020 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0902

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3T1H|1|A|G|444
3T1H|1|A|A|445
3T1H|1|A|A|446
3T1H|1|A|A|447
3T1H|1|A|C|448
3T1H|1|A|C|449
*
3T1H|1|A|G|461
3T1H|1|A|A|462
3T1H|1|A|C|463
3T1H|1|A|U|464
3T1H|1|A|G|465
3T1H|1|A|A|466
3T1H|1|A|C|467

Current chains

Chain A

16s rRNA

Nearby chains

Chain P

30S ribosomal protein S16