IL_3T1Y_054

3D structure

PDB id

3T1Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3T1Y_054 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1028

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3T1Y|1|A|G|1383
3T1Y|1|A|C|1384
3T1Y|1|A|C|1385
3T1Y|1|A|C|1386
*
3T1Y|1|A|G|1474
3T1Y|1|A|U|1475
3T1Y|1|A|A|1476
3T1Y|1|A|A|1477
3T1Y|1|A|C|1478

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

mRNA A-site fragment