IL_3T1Y_055

3D structure

PDB id

3T1Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3T1Y_055 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.1875

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

3T1Y|1|A|G|1387
3T1Y|1|A|U|1388
3T1Y|1|A|C|1389
*
3T1Y|1|A|G|1471
3T1Y|1|A|U|1472
3T1Y|1|A|C|1473

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

mRNA A-site fragment

Chain X

tRNA ASL human Lys3