IL_3T4B_004

3D structure

PDB id

3T4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the HCV IRES pseudoknot domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

AG*UAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3T4B_004 not in the Motif Atlas

Geometric match to IL_1U6B_010

Geometric discrepancy: 0.1577

The information below is about IL_1U6B_010

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

3T4B|1|A|A|5
3T4B|1|A|G|6
*
3T4B|1|A|U|17
3T4B|1|A|A|18
3T4B|1|A|U|19

Current chains

Chain A

HCV IRES pseudoknot domain plus crystallization module

Nearby chains