IL_3U5F_032

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

3U5F|1|6|A|579, 3U5F|1|6|U|581, 3U5F|1|6|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28572.5

Basepair signature

cWW-tWH-cSW-L-R-R-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3U5F|1|6|G|562
3U5F|1|6|U|563
3U5F|1|6|G|564
3U5F|1|6|C|565
3U5F|1|6|C|566
3U5F|1|6|A|567
3U5F|1|6|G|568
*
3U5F|1|6|C|575
3U5F|1|6|G|576
3U5F|1|6|G|577
3U5F|1|6|U|578
3U5F|1|6|A|579
3U5F|1|6|A|580
3U5F|1|6|U|581
3U5F|1|6|U|582
3U5F|1|6|C|583

Current chains

Chain 6

18S rRNA

Nearby chains