Motif IL_28572.5 Version IL_28572.5 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_032 | 4CUX | 0.1606 | 3 | 2 | 18S RRNA | G | 562 | U | 563 | G | 564 | C | 565 | C | 566 | A | 567 | G | 568 | * | C | 575 | G | 576 | G | 577 | U | 578 | A | 580 | C | 583 | ncWW | cSW | ntHS | cWW | |||
| 2 | IL_4BPP_032 | 4BPP | 0.1482 | 3 | A | 18S RRNA | G | 556 | U | 557 | G | 558 | C | 559 | C | 560 | A | 561 | G | 562 | * | C | 569 | G | 570 | G | 571 | U | 572 | A | 574 | C | 577 | cWW | cSW | tWH | ntHS | ntWW | cWW | |
| 3 | IL_3J7A_026 | 3J7A | 0.1102 | 3 | Kink-turn related (H) | A | SSU rRNA | G | 569 | U | 570 | G | 571 | C | 572 | C | 573 | A | 574 | G | 575 | * | C | 582 | G | 583 | G | 584 | U | 585 | A | 587 | C | 590 | cWW | ncSW | tWH | tHS | ntWW | cWW |
| 4 | IL_3U5F_032 | 3U5F | 0.0000 | 3 | 6 | 18S rRNA | G | 562 | U | 563 | G | 564 | C | 565 | C | 566 | A | 567 | G | 568 | * | C | 575 | G | 576 | G | 577 | U | 578 | A | 580 | C | 583 | cWW | cSW | tWH | tHS | cWW | ||
| 5 | IL_2AW7_028 | 2AW7 | 0.2473 | 3 | A | 16S ribosomal RNA | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | C | 536 | cWW | ncSW | tWH | ntHS | ntWW | cWW | |
| 6 | IL_1FJG_021 | 1FJG | 0.2553 | 3 | A | SSU rRNA | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | C | 536 | cWW | cSW | tWH | tHS | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGCCAG*CGGUAAUUC | 4 |
| GUGCCAG*CGGUAAUAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCCA*GGUAAUU | 4 |
| UGCCA*GGUAAUA | 2 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_28572.5 | Only in the parent motif |
|---|---|---|---|
| IL_28572.4 Compare | IL_4CUX_032, IL_3J7A_026, IL_4BPP_032, IL_3U5F_032, IL_1FJG_021, IL_2AW7_028 | IL_1VX2_028 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Kink-turn related (H) (1)
- Basepair signature
- cWW-tWH-cSW-L-R-R-L-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.18 | Max 0.30
Coloring options: