IL_3U5F_076

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCAGCGA*UUGUGAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52940.1

Basepair signature

cWW-L-R-R-R-R-L-L-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

3U5F|1|6|G|1480
3U5F|1|6|C|1481
3U5F|1|6|C|1482
3U5F|1|6|A|1483
3U5F|1|6|G|1484
3U5F|1|6|C|1485
3U5F|1|6|G|1486
3U5F|1|6|A|1487
*
3U5F|1|6|U|1519
3U5F|1|6|U|1520
3U5F|1|6|G|1521
3U5F|1|6|U|1522
3U5F|1|6|G|1523
3U5F|1|6|A|1524
3U5F|1|6|A|1525
3U5F|1|6|A|1526
3U5F|1|6|C|1527

Current chains

Chain 6

18S rRNA

Nearby chains