Motif IL_52940.1 Version IL_52940.1 of this group appears in releases 0.6 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-12 | 2-13 | 3-12 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_049 | 1FJG | 0.0000 | 0 | A | SSU rRNA | U | 1247 | A | 1248 | C | 1249 | A | 1250 | A | 1251 | A | 1252 | G | 1253 | * | C | 1284 | A | 1285 | A | 1286 | A | 1287 | A | 1288 | A | 1289 | G | 1290 | cWW | ntWH | tWH | tWW | cWW | ||
| 2 | IL_3U5F_076 | 3U5F | 0.7780 | 3 | 6 | 18S rRNA | G | 1480 | C | 1482 | A | 1483 | G | 1484 | C | 1485 | G | 1486 | A | 1487 | * | U | 1519 | U | 1520 | U | 1522 | A | 1524 | A | 1525 | A | 1526 | C | 1527 | cWW | tWH | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACAAAG*CAAAAAG | 1 |
| GCCAGCGA*UUGUGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAAA*AAAAA | 1 |
| CCAGCG*UGUGAAA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_52940.1 | Only in the parent motif |
|---|---|---|---|
| IL_87637.1 Compare | IL_1FJG_049 | IL_3U5F_076 |
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-R-R-R-L-L-L-tWW-cWW
- Heat map statistics
- Min 0.78 | Avg 0.39 | Max 0.78
Coloring options: