IL_3U5H_015

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGUAC

Length

18 nucleotides

Bulged bases

3U5H|1|5|A|398, 3U5H|1|5|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02359.6

Basepair signature

cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3U5H|1|5|G|376
3U5H|1|5|A|377
3U5H|1|5|A|378
3U5H|1|5|C|379
*
3U5H|1|5|G|390
3U5H|1|5|A|391
3U5H|1|5|G|392
3U5H|1|5|U|393
3U5H|1|5|G|394
3U5H|1|5|A|395
3U5H|1|5|A|396
3U5H|1|5|A|397
3U5H|1|5|A|398
3U5H|1|5|A|399
3U5H|1|5|G|400
3U5H|1|5|U|401
3U5H|1|5|A|402
3U5H|1|5|C|403

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 8

5.8S rRNA