IL_3U5H_064

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGACGAAG*UCGAA

Length

13 nucleotides

Bulged bases

3U5H|1|5|C|1391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65553.12

Basepair signature

cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

3U5H|1|5|U|1388
3U5H|1|5|G|1389
3U5H|1|5|A|1390
3U5H|1|5|C|1391
3U5H|1|5|G|1392
3U5H|1|5|A|1393
3U5H|1|5|A|1394
3U5H|1|5|G|1395
*
3U5H|1|5|U|1415
3U5H|1|5|C|1416
3U5H|1|5|G|1417
3U5H|1|5|A|1418
3U5H|1|5|A|1419

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 8

5.8S rRNA