IL_3U5H_066

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49493.8

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

3U5H|1|5|G|1444
3U5H|1|5|U|1445
3U5H|1|5|A|1446
3U5H|1|5|G|1447
3U5H|1|5|U|1448
3U5H|1|5|A|1449
3U5H|1|5|G|1450
*
3U5H|1|5|C|2354
3U5H|1|5|G|2355
3U5H|1|5|A|2356
3U5H|1|5|A|2357
3U5H|1|5|A|2358
3U5H|1|5|C|2359

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 8

5.8S rRNA