IL_3U5H_130

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UACGAAUAAG*CGCUGAA

Length

17 nucleotides

Bulged bases

3U5H|1|5|A|3180, 3U5H|1|5|A|3186, 3U5H|1|5|U|3207, 3U5H|1|5|A|3209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98172.1

Basepair signature

cWW-L-R-R-L-L-cSS-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3U5H|1|5|U|3179
3U5H|1|5|A|3180
3U5H|1|5|C|3181
3U5H|1|5|G|3182
3U5H|1|5|A|3183
3U5H|1|5|A|3184
3U5H|1|5|U|3185
3U5H|1|5|A|3186
3U5H|1|5|A|3187
3U5H|1|5|G|3188
*
3U5H|1|5|C|3204
3U5H|1|5|G|3205
3U5H|1|5|C|3206
3U5H|1|5|U|3207
3U5H|1|5|G|3208
3U5H|1|5|A|3209
3U5H|1|5|A|3210

Current chains

Chain 5

25S rRNA

Nearby chains