IL_3UD4_003

3D structure

PDB id

3UD4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The C92U mutant c-di-GMP-I riboswitch bound to GpA

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GG*UAGC

Length

6 nucleotides

Bulged bases

3UD4|1|R|A|82, 3UD4|1|R|G|83

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3UD4_003 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.1134

The information below is about IL_3MXH_004

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

3UD4|1|R|G|56
3UD4|1|R|G|57
*
3UD4|1|R|U|81
3UD4|1|R|A|82
3UD4|1|R|G|83
3UD4|1|R|C|84

Current chains

Chain R

RNA (92-MER)

Nearby chains