IL_3UMY_003

3D structure

PDB id

3UMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of mutant ribosomal protein T217A TthL1 in complex with 80nt 23S RNA from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77076.3

Basepair signature

cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-cWW

Number of instances in this motif group

4

Unit IDs

3UMY|1|B|G|2124
3UMY|1|B|G|2125
3UMY|1|B|A|2126
3UMY|1|B|G|2127
*
3UMY|1|B|C|2161
3UMY|1|B|G|2162
3UMY|1|B|C|2163
3UMY|1|B|C|2164
3UMY|1|B|G|2165
3UMY|1|B|G|2166
3UMY|1|B|U|2167
3UMY|1|B|G|2168
3UMY|1|B|A|2169
3UMY|1|B|A|2170
3UMY|1|B|A|2171
3UMY|1|B|U|2172
3UMY|1|B|A|2173
3UMY|1|B|C|2174

Current chains

Chain B

RNA (80-MER)

Nearby chains

Chain A

50S ribosomal protein L1