Motif IL_77076.3 Version IL_77076.3 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-6 | 4-5 | 4-16 | 5-16 | 9-15 | 10-15 | 11-14 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_106 | 4CUV | 0.1583 | 1 | 1 | 25S RRNA | G | 2466 | G | 2467 | A | 2468 | G | 2469 | * | C | 2476 | G | 2477 | C | 2478 | C | 2479 | G | 2480 | G | 2481 | U | 2482 | G | 2483 | A | 2485 | A | 2486 | U | 2487 | A | 2488 | C | 2489 | cWW | ntSH | tSs | ncWW | tWH | ||||
| 2 | IL_1MZP_003 | 1MZP | 0.0000 | 1 | B | fragment of 23S rRNA | G | 20 | G | 21 | A | 22 | G | 23 | * | C | 32 | G | 33 | C | 34 | C | 35 | G | 36 | G | 37 | U | 38 | G | 39 | A | 41 | A | 42 | U | 43 | A | 44 | C | 45 | cWW | tSH | ntSs | cWW | ntsS | ntWH | tWH | ||
| 3 | IL_3UMY_003 | 3UMY | 0.1503 | 1 | B | LSU rRNA | G | 2124 | G | 2125 | A | 2126 | G | 2127 | * | C | 2161 | G | 2162 | C | 2163 | C | 2164 | G | 2165 | G | 2166 | U | 2167 | G | 2168 | A | 2170 | A | 2171 | U | 2172 | A | 2173 | C | 2174 | cWW | tSH | tSs | cWW | tsS | ncsS | tWH | tWH | |
| 4 | IL_4QCN_082 | 4QCN | 0.4417 | 1 | A | 23S Ribosomal RNA | G | 2146 | G | 2147 | A | 2148 | G | 2149 | * | C | 2183 | G | 2184 | C | 2185 | C | 2186 | G | 2187 | G | 2188 | U | 2189 | G | 2190 | A | 2192 | A | 2193 | U | 2194 | A | 2195 | C | 2196 | cWW | tSH | ncWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CGCCGGUGAAAUAC | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GCCGGUGAAAUA | 4 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_77076.3 | Only in the parent motif |
|---|---|---|---|
| IL_77076.2 Compare | IL_4CUV_106, IL_3UMY_003, IL_1MZP_003 | IL_4QCN_082 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.23 | Max 0.48
Coloring options: