IL_3UXR_027

3D structure

PDB id

3UXR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24022.1

Basepair signature

10_cWW-cSH,tWH-tWH,tSH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3UXR|1|A|U|858
3UXR|1|A|G|859
3UXR|1|A|U|860
3UXR|1|A|A|861
3UXR|1|A|G|862
*
3UXR|1|A|C|915
3UXR|1|A|G|916
3UXR|1|A|A|917
3UXR|1|A|A|918
3UXR|1|A|G|919

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

50S ribosomal protein L16