Motif IL_24022.1 Version IL_24022.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 2-8 | 3-8 | 3-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_034 | 1S72 | 0.8004 | 0 | 0 | LSU rRNA | G | 952 | G | 953 | U | 954 | A | 955 | G | 956 | * | C | 1011 | A | 1012 | A | 1013 | A | 1014 | C | 1015 | cWW | cSH | tWH | tHS | cWW | |||
| 2 | IL_2QBG_031 | 2QBG | 0.8009 | 0 | B | 23S rRNA | G | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | U | 919 | cWW | cSH | tWH | tHS | cWW | |||
| 3 | IL_2ZJR_094 | 2ZJR | 0.7690 | 4 | tSH-tHS-tHW (H) | X | LSU rRNA | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | * | C | 2754 | A | 2755 | A | 2756 | A | 2758 | G | 2762 | cWW | tWH | tSH | ntHS | cWW | ||
| 4 | IL_3UXR_027 | 3UXR | 0.0000 | 0 | A | 23S ribosomal RNA | U | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | G | 919 | cWW | cSH | tWH | tHS | cWW | |||
| 5 | IL_1S72_089 | 1S72 | 0.2412 | 4 | 0 | LSU rRNA | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | * | G | 2809 | G | 2810 | A | 2811 | A | 2813 | G | 2817 | cWW | tWH | tSH | tHS | cWW | |||
| 6 | IL_3UXR_098 | 3UXR | 0.3198 | 4 | A | 23S ribosomal RNA | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | * | C | 2774 | A | 2775 | A | 2776 | A | 2778 | G | 2782 | cWW | tWH | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGAG*CAAGAUGAG | 2 |
| GGUAG*CAAAC | 1 |
| GGUAG*CGAAU | 1 |
| UGUAG*CGAAG | 1 |
| CUGAC*GGAAAAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*GAA | 2 |
| UGA*AAGAUGA | 2 |
| GUA*AAA | 1 |
| UGA*GAAAAGA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_24022.1 | Only in the parent motif |
|---|---|---|---|
| IL_94438.1 Compare | IL_1S72_089, IL_2ZJR_094 | IL_3UXR_098, IL_3UXR_027, IL_2QBG_031, IL_1S72_034 | IL_3PYO_089, IL_2QBG_100 |
| IL_54567.1 Compare | IL_1S72_034, IL_2QBG_031 | IL_3UXR_098, IL_1S72_089, IL_3UXR_027, IL_2ZJR_094 |
Children motifs
| Child motif | Common motif instances | Only in IL_24022.1 | Only in the child motif |
|---|---|---|---|
| IL_24022.2 Compare | IL_1S72_089, IL_2QBG_031, IL_1S72_034, IL_2ZJR_094 | IL_3UXR_098, IL_3UXR_027 | IL_3V2F_098, IL_3V2F_027 |
- Annotations
-
- (5)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- 10_cWW-cSH,tWH-tWH,tSH-tHS-cWW
- Heat map statistics
- Min 0.12 | Avg 0.50 | Max 0.92
Coloring options: