IL_3UXR_074

3D structure

PDB id

3UXR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

3UXR|1|A|A|1938, 3UXR|1|A|U|1944, 3UXR|1|A|U|1963

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10109.1

Basepair signature

13_cWW--cHW---cSH,cSH----cWW

Number of instances in this motif group

1

Unit IDs

3UXR|1|A|C|1934
3UXR|1|A|G|1935
3UXR|1|A|A|1936
3UXR|1|A|A|1937
3UXR|1|A|A|1938
3UXR|1|A|U|1939
3UXR|1|A|U|1940
3UXR|1|A|C|1941
3UXR|1|A|C|1942
3UXR|1|A|U|1943
3UXR|1|A|U|1944
3UXR|1|A|G|1945
*
3UXR|1|A|C|1961
3UXR|1|A|C|1962
3UXR|1|A|U|1963
3UXR|1|A|G|1964

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2