IL_3V2F_039

3D structure

PDB id

3V2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome. This PDB entry contains coordinates for the 50S subunit of the 2nd ribosome in the ASU

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

3V2F|1|A|U|1142, 3V2F|1|A|A|1143

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38807.3

Basepair signature

cWW-tWH-L-tHW-cSH-cWW

Number of instances in this motif group

4

Unit IDs

3V2F|1|A|C|1018
3V2F|1|A|U|1019
3V2F|1|A|A|1020
3V2F|1|A|A|1021
3V2F|1|A|G|1022
3V2F|1|A|U|1023
3V2F|1|A|G|1024
*
3V2F|1|A|C|1140
3V2F|1|A|U|1141
3V2F|1|A|U|1142
3V2F|1|A|A|1142|||A
3V2F|1|A|A|1143
3V2F|1|A|G|1144

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain H

50S Ribosomal Protein L6

Chain N

50S Ribosomal Protein L13