Motif IL_38807.3 Version IL_38807.3 of this group appears in releases 1.1 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-4 | 2-10 | 4-9 | 4-10 | 5-6 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_041 | 1S72 | 0.0576 | 2 | 0 | LSU rRNA | U | 1115 | U | 1116 | A | 1117 | A | 1118 | G | 1119 | U | 1120 | G | 1121 | * | C | 1243 | U | 1244 | A | 1246 | A | 1248 | cWW | ncSW | ntWH | ntHW | ntWW | cSH | cWW | |
| 2 | IL_3V2F_039 | 3V2F | 0.0000 | 2 | A | 23S Ribosomal RNA | C | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142|||A | G | 1144 | cWW | ncSW | ntWH | ntHW | ntWW | cSH | cWW | |
| 3 | IL_4IOA_035 | 4IOA | 0.0849 | 2 | X | LSU rRNA | C | 1029 | U | 1030 | C | 1031 | A | 1032 | G | 1033 | U | 1034 | G | 1035 | * | C | 1150 | U | 1151 | A | 1153 | G | 1155 | cWW | ntWH | ntHW | ntWW | cSH | cWW | ||
| 4 | IL_2QBG_039 | 2QBG | 0.1229 | 1 | B | 23S rRNA | U | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142 | A | 1144 | cWW | tWH | ntHW | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAGUG*CUCAAA | 1 |
| CUAAGUG*CUUAAG | 1 |
| CUCAGUG*CUCAAG | 1 |
| UUAAGUG*CUAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAGU*UCAA | 1 |
| UAAGU*UUAA | 1 |
| UCAGU*UCAA | 1 |
| UAAGU*UAA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_38807.3 | Only in the parent motif |
|---|---|---|---|
| IL_38807.2 Compare | IL_3V2F_039, IL_2QBG_039, IL_1S72_041 | IL_4IOA_035 | IL_2ZJR_035 |
Children motifs
| Child motif | Common motif instances | Only in IL_38807.3 | Only in the child motif |
|---|---|---|---|
| IL_04397.1 Compare | IL_1S72_041, IL_4IOA_035, IL_2QBG_039 | IL_3V2F_039 | IL_1VW3_034, IL_4NVV_041 |
- Annotations
- Basepair signature
- cWW-tWH-L-tHW-cSH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.07 | Max 0.13
Coloring options: