IL_3V7E_002
3D structure
- PDB id
- 3V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of YbxF bound to the SAM-I riboswitch aptamer
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGAG*CGAUGAAA
- Length
- 13 nucleotides
- Bulged bases
- 3V7E|1|C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
3V7E|1|C|U|17
3V7E|1|C|G|18
3V7E|1|C|G|19
3V7E|1|C|A|20
3V7E|1|C|G|21
*
3V7E|1|C|C|31
3V7E|1|C|G|32
3V7E|1|C|A|33
3V7E|1|C|U|34
3V7E|1|C|G|35
3V7E|1|C|A|36
3V7E|1|C|A|37
3V7E|1|C|A|38
Current chains
- Chain C
- SAM-I riboswitch aptamer with an engineered helix P3
Nearby chains
- Chain A
- Ribosome-associated protein L7Ae-like
- Chain D
- SAM riboswitch; S box leader; SAM-I riboswitch
Coloring options: