3V7E Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3V7E_001 | 1/C/23:29 | Pseudoknot geometry | ||
| HL_3V7E_002 | 1/C/65:70 | UNCG | ||
| HL_3V7E_003 | 1/C/105:110 | GNRA | ||
| HL_3V7E_004 | 1/D/223:229 | Pseudoknot geometry HL_30680.5 | ||
| HL_3V7E_005 | 1/D/265:270 | UNCG HL_61337.3 | ||
| HL_3V7E_006 | 1/D/305:310 | GNRA HL_34789.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3V7E_001 | 1/C/13:15, 1/C/40:41 | Single bulged A | ||
| IL_3V7E_002 | 1/C/17:21, 1/C/31:38 | Kink-turn | ||
| IL_3V7E_003 | 1/C/44:47, 1/C/88:90 | Major groove platform with extra pair | ||
| IL_3V7E_005 | 1/C/96:101, 1/C/114:117 | No text annotation | homologous IL_3V7E_009 IL_69145.4 | |
| IL_3V7E_010 | 1/D/213:215, 1/D/240:241 | No text annotation | ||
| IL_3V7E_006 | 1/D/217:221, 1/D/231:238 | Kink-turn IL_90775.2 | ||
| IL_3V7E_007 | 1/D/244:247, 1/D/288:290 | Major groove platform with extra pair IL_15698.5 | ||
| IL_3V7E_009 | 1/D/296:301, 1/D/314:317 | No text annotation IL_69145.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3V7E_004 | No text annotation | ||
| IL_3V7E_008 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3V7E_001 | 1/C/8:13, 1/C/41:42, 1/C/92:96, 1/C/117:118 | No text annotation | ||
| J4_3V7E_002 | 1/D/208:213, 1/D/241:242, 1/D/292:296, 1/D/317:318 | No text annotation |
Problematic loops
No problematic loops
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