IL_3VNU_001

3D structure

PDB id

3VNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex structure of viral RNA polymerase I

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3VNU_001 not in the Motif Atlas

Geometric match to IL_5AY2_003

Geometric discrepancy: 0.2391

The information below is about IL_5AY2_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

3VNU|1|G|C|2006
3VNU|1|G|C|2007
3VNU|1|G|C|2008
*
3VNU|1|T|G|2101
3VNU|1|T|G|2102
3VNU|1|T|G|2103

Current chains

Chain G

RNA (5'-R(*CP*CP*CP*UP*AP*CP*CP*C)-3')

Chain T

RNA (5'-R(*GP*GP*GP*UP*AP*GP*GP*G)-3')

Nearby chains

Chain A

Elongation factor Ts, Elongation factor Tu, LINKER, Q beta replicase