IL_402D_001

3D structure

PDB id

402D (explore in PDB, NAKB, or RNA 3D Hub)

Description

5'-R(*CP*GP*CP*CP*AP*GP*CP*G)-3'

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CCAG*CCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

402D|1|A|C|103
402D|1|A|C|104
402D|1|A|A|105
402D|1|A|G|106
*
402D|1|B|C|111
402D|1|B|C|112
402D|1|B|A|113
402D|1|B|G|114

Current chains

Chain A

RNA(5'-R(*CP*GP*CP*CP*AP*GP*CP*G)-3')

Chain B

RNA(5'-R(*CP*GP*CP*CP*AP*GP*CP*G)-3')

Nearby chains