IL_405D_001

3D structure

PDB id

405D (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

ACU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92602.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

321

Unit IDs

405D|1|A|A|5
405D|1|A|C|6
405D|1|A|U|7
*
405D|1|B|A|26
405D|1|B|A|27
405D|1|B|U|28

Current chains

Chain A

RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3')

Chain B

RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3')

Nearby chains