RNA 3D Hub //

Motif IL_92602.2 Version IL_92602.2 of this group appears in releases 1.18 to 1.18

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-52-63-43-55-6
1 IL_2QBG_0852QBG0.67620B23S rRNAA2108U2109G2110*C2179U2180U2181cWWcWW
2 IL_4W21_1534W210.57300528S ribosomal RNAG4659G4660G4661*U4638G4639C4640ncWWncWHcWW
3 IL_4CUX_0224CUX0.64580218S RRNAU406A407C408*G389G390A391cWWncWHcWW
4 IL_4W21_1424W210.61202528S ribosomal RNAC4456U4457C4458*G4520U4521G4524ncWwcWW
5 IL_4CUV_1184CUV0.65002125S RRNAC2879U2880C2881*G2943U2944G2947cWWcWwcWW
6 IL_3U5H_1143U5H0.63732525S rRNAC2879U2880C2881*G2943U2944G2947cWWcWwcWW
7 IL_1VX6_1151VX60.64322A28S ribosomal RNAC3238U3239C3240*G3302U3303G3306cWWcWwcWW
8 IL_4A1B_1124A1B0.65792126S RRNAC2867U2868C2869*G2931U2932G2935cWWcWwcWW
9 IL_4IOA_0914IOA0.61312Isolated non-canonical cWW with bulges (H)X LSU rRNAC2489U2490C2491*G2553C2554G2557cWWncWWcWW
10 IL_4QCN_0944QCN0.60502A23S Ribosomal RNAC2522U2523C2524*G2586C2587G2590cWWncWWcWW
11 IL_1VW3_0791VW30.58832A21S ribosomal RNAC2776U2777C2778*G2841U2842G2845cWWcWwcWW
12 IL_2QBG_0962QBG0.59422B23S rRNAC2510U2511C2512*G2574C2575G2578cWWcWWcWW
13 IL_3KTW_0023KTW0.57751Isolated non-canonical cWW with bulgesC SRP RNAG152G153U154*A177U178C180ncWWcWWcWWncSH
14 IL_1VW3_0921VW30.50191A21S ribosomal RNAG3158G3159U3160*A3245U3246C3248cWWncWWcWW
15 IL_4IOA_1044IOA0.65111Y 5S rRNAC19A20C21*G66C67G69cWWcWWcWW
16 IL_1S72_0951S720.64441Isolated non-canonical cWW with bulges (H)0 LSU rRNAG2855A2856C2857*G2900C2901C2903cWWncWWcWW
17 IL_4CUX_0444CUX0.54601218S RRNAG868A869C870*G957U958U960ncWWcWW
18 IL_4IOA_0544IOA0.59101X LSU rRNAU1447A1448C1449*G1573A1574G1576cWWncwWcWW
19 IL_2QBG_0342QBG0.41070B23S rRNAA905U906G907*U870U871U872cWWncWwcWW
20 IL_4A1C_0094A1C0.4260135S RRNAG82G83G85*C92G93C94cWWcWW
21 IL_4CUX_0234CUX0.52010218S RRNAA420A421G422*C411A412U413cWWcWW
22 IL_3NJ7_0023NJ70.51220B+ARNA (10-mer)C3A4G5*C6A7G8cWWcWW
23 IL_3NJ6_0013NJ60.53620ARNA (10-mer)C3A4G5*C6||||6_555A7||||6_555G8||||6_555cWWcWW
24 IL_3NJ6_0023NJ60.53620ARNA (10-mer)C3||||6_555A4||||6_555G5||||6_555*C6A7G8cWWcWW
25 IL_4A1B_0244A1B0.50180126S RRNAG555A556U557*A610A611C612cWWncWwcWW
26 IL_4A1B_0614A1B0.56111126S RRNAC1403G1404U1405*A1454U1456G1457cWWcWScWW
27 IL_4W23_0304W230.42370218S ribosomal RNAC663A664G665*C1162C1163G1164cWWncWWcWW
28 IL_4J5V_0024J5V0.31720BRNA (19-mer)C204A205G206*C214||||4_555C215||||4_555G216||||4_555cWWcWWcWW
29 IL_4J5V_0064J5V0.31720BRNA (19-mer)C204||||4_555A205||||4_555G206||||4_555*C214C215G216cWWcWWcWW
30 IL_4J5V_0074J5V0.38050BRNA (19-mer)C201||||4_555A202||||4_555G203||||4_555*C217C218G219cWWcWW
31 IL_4J5V_0014J5V0.38050BRNA (19-mer)C201A202G203*C217||||4_555C218||||4_555G219||||4_555cWWcWW
32 IL_3U5F_0503U5F0.31600618S rRNAU917U918A919*U893U894G895ncWWcWwcWW
33 IL_4W21_0314W210.41212528S ribosomal RNAG646G647G648*C511U512C515cWWncWWcWW
34 IL_4CUX_0404CUX0.46060218S RRNAU748U749U750*A799U800G801cWWcWwcWW
35 IL_3J7A_0323J7A0.44390Isolated non-canonical cWW pair (H)A SSU rRNAU798U799U800*A862U863G864cWWcWwcWW
36 IL_3U5F_0413U5F0.39670618S rRNAU748U749U750*A799U800G801cWWcWwcWW
37 IL_4IOA_0784IOA0.37280Isolated non-canonical cWW pair (H)X LSU rRNAU2211U2212G2213*C2068U2069G2070cWWcWwcWW
38 IL_2QBG_0832QBG0.40100B23S rRNAU2085U2086G2087*C2232U2233G2234cWWcWwcWW
39 IL_4QCN_0794QCN0.42940A23S Ribosomal RNAU2244U2245G2246*C2107U2108G2109cWWcWwcWW
40 IL_4BPP_0384BPP0.40891A18S RRNAU647U649C650*G659U660G661cWWcWwcWW
41 IL_4CUX_0734CUX0.53822218S RRNAU1369U1372C1373*G1352U1353G1354cWWcWwcWW
42 IL_2AW7_0492AW70.59832A16S ribosomal RNAU1052A1055U1056*A1204U1205G1206cWWcWW
43 IL_3U5F_0673U5F0.60412618S rRNAU1272A1275U1276*A1436U1437G1438cWWncWScWW
44 IL_4BPP_0654BPP0.61052A18S RRNAU1244A1247U1248*A1407U1408G1409cWWcWW
45 IL_4CUX_0894CUX0.39870218S RRNAU1665U1666A1667*U1734U1735G1736cWWcWW
46 IL_1VX6_0781VX60.34520A28S ribosomal RNAC1861A1862A1863*U1895C1896G1897cWWncWWcWW
47 IL_3GLP_0013GLP0.28530A+BRNA (8-mer)C2U3G4*C5||AU6G7cWWcWW
48 IL_4IOA_1094IOA0.37160Isolated non-canonical cWW pair (H)Y 5S rRNAU82C83G84*C97C98G99cWWcBWcWW
49 IL_4W21_1754W210.2914075S ribosomal RNAU79U80G81*C95U96G97cWWcWwcWW
50 IL_3U5F_0873U5F0.34620618S rRNAU1665U1666A1667*U1734U1735G1736cWWcWW
51 IL_3J7A_0793J7A0.36720A SSU rRNAU1970U1971G1972*C2018C2019G2020cWWcWWcWW
52 IL_4IOA_0444IOA0.38190Isolated non-canonical cWW pair (H)X LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
53 IL_3U5F_0723U5F0.33591618S rRNAC1339A1341C1342*G1383A1384G1385cWWncwWcWW
54 IL_4BPP_0704BPP0.36471A18S RRNAC1311G1313C1314*G1353A1354G1355cWWcWWcWW
55 IL_4CUX_0694CUX0.48071218S RRNAC1339A1341C1342*G1383A1384G1385cWWcWW
56 IL_1MFQ_0031MFQ0.44290Isolated non-canonical cWW pairA SRP RNAA163G164G165*U132A133U134cWWncWWcWW
57 IL_1NLC_0011NLC0.36921A+BHIV-1 DIS(MAL) genomic RNAG7G9G10*C15A16C17cWWcWWcWW
58 IL_1XJR_0031XJR0.32741Isolated non-canonical cWW pairAs2m RNAG32G34G35*C16A17C18cWWcWWcWW
59 IL_1NLC_0021NLC0.32701B+AHIV-1 DIS(MAL) genomic RNAG7||AG9||AG10*C15A16C17cWWcWWcWW
60 IL_2QBG_0302QBG0.32970B23S rRNAG856G857G858*U919A920C921cWWcWWcWW
61 IL_1FJG_0101FJG0.24640Isolated non-canonical cWW pair (H)A SSU rRNAG190|||KU190|||LG191*C186C187C188cWWcWWcWW
62 IL_1VX6_0061VX60.25700A28S ribosomal RNAA149C150G151*C126U127U128ncWWcWWncWWcWW
63 IL_4CUV_1334CUV0.33570125S RRNAA3168U3169A3170*U3280U3281U3282cWWncwWcWW
64 IL_1VW3_0311VW30.28030A21S ribosomal RNAA890A891A892*U877G878U879cWWcWWcWW
65 IL_4CUV_1394CUV0.21020125S RRNAG3252G3253G3254*C3233A3234C3235cWWcWWcWW
66 IL_3J7A_0773J7A0.17340Isolated non-canonical cWW pair (H)A SSU rRNAA1962U1963G1964*C2026C2027U2028cWWcWWcWW
67 IL_3CUN_0023CUN0.17360CRNA (92-MER)U57G58G59*C87A88G89ncWWcWWcWW
68 IL_5MSF_0015MSF0.22431Isolated non-canonical cWW pairRRNA (18-mer)G3||||P_1G4||||P_1G6||||P_1*C13||||P_1A14||||P_1C15||||P_1cWWcWWcWW
69 IL_3D0U_0063D0U0.21820Isolated non-canonical cWW pairALysine Riboswitch RNAG112G113G114*C134A135C136cWWcWWcWW
70 IL_3DIR_0063DIR0.22410ARNA (174-MER)G115G116G117*C137A138C139cWWcWWcWW
71 IL_3U5H_1333U5H0.22800525S rRNAG3252G3253G3254*C3233A3234C3235cWWcWWcWW
72 IL_4CUV_1564CUV0.2357135S RRNAA84G85G87*C94A95U96cWWcWWcWW
73 IL_3U5H_1493U5H0.2686175S rRNAA84G85G87*C94A95U96cWWcWWcWW
74 IL_4M4O_0014M4O0.27750Isolated non-canonical cWW pairBRNA (59-MER)A52C53G54*C6A7U8cWWcWWacWW
75 IL_4BPP_0584BPP0.32050A18S RRNAG1435C1436G1437*C1145C1146U1147cWWncBWcWW
76 IL_3U5F_0613U5F0.28010618S rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
77 IL_3J7A_0543J7A0.28580Isolated non-canonical cWW pair (H)A SSU rRNAG1710U1711G1712*C1274U1275U1276cWWncWwcWW
78 IL_3U5H_0493U5H0.28230525S rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
79 IL_2AW7_0642AW70.33360A16S ribosomal RNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
80 IL_4W21_1624W210.37340528S ribosomal RNAG4992G4993G4994*C5057A5058C5059ncWWcWWcWW
81 IL_4W21_0034W210.461008+55.8S ribosomal RNAG139C140C141*G16A17C18ncWWcWW
82 IL_4W23_0084W230.32340218S ribosomal RNAA349C350G351*U110A111U112ncWWncWWacWW
83 IL_4AOB_0054AOB0.36800Isolated non-canonical cWW pairA SAM-I riboswitchG71A72G73*C78G79U80cWWncWWcWW
84 IL_3U5H_1163U5H0.39260525S rRNAG2912C2913G2914*C2889A2890U2891cWWncWWacWW
85 IL_4CUV_1204CUV0.38400125S RRNAG2912C2913G2914*C2889A2890U2891cWWncWWcWW
86 IL_4IOA_0254IOA0.30220X LSU rRNAA936C937G938*C864A865U866cWWcWWcWW
87 IL_1VX6_0521VX60.38010A28S ribosomal RNAG1191C1192G1193*C1214A1215C1216cWWcWWcWW
88 IL_4W21_1764W210.3562175S ribosomal RNAG82A83G85*C92G93C94cWWncWWcWW
89 IL_3J7A_0733J7A0.34721A SSU rRNAG2046A2047G2049*C1941G1942C1943cWWcWWcWW
90 IL_3TD0_0023TD00.36431Isolated non-canonical cWW pairB+ARNA (23-mer)G39A40G42*C7G8C9cWWcWWcWW
91 IL_3TD0_0053TD00.35451Isolated non-canonical cWW pairA+BRNA (23-mer)G16A17G19*C30G31C32cWWcWWcWW
92 IL_3J7A_0433J7A0.32361A SSU rRNAU943G944G946*U1020A1021A1022cWWcWWcWW
93 IL_3RW6_0043RW60.26650Isolated non-canonical cWW pairHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
94 IL_4CUV_0084CUV0.31520125S RRNAC125U126G127*C141C142G143cWWncWWcWW
95 IL_3U5H_0083U5H0.24930525S rRNAC125U126G127*C141C142G143cWWcWWcWW
96 IL_4A1B_0134A1B0.33840126S RRNAC422U423G424*C656U657G658cWWcWW
97 IL_1S72_0241S720.27440Isolated non-canonical cWW pair (H)0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
98 IL_4CUV_0324CUV0.20050125S RRNAC938U939G940*C803C804G805cWWcWWcWW
99 IL_3U5H_0283U5H0.22090525S rRNAC938U939G940*C803C804G805cWWcWWcWW
100 IL_4A1B_0344A1B0.24090126S RRNAC963U964G965*C828C829G830cWWcWWcWW
101 IL_4QCN_0174QCN0.19490A23S Ribosomal RNAC853U854G855*C719C720G721cWWcWWcWW
102 IL_2QBG_0202QBG0.18480B23S rRNAC806U807G808*C672C673G674cWWcWWcWW
103 IL_4IOA_0134IOA0.18890X LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
104 IL_1VW3_0161VW30.15690A21S ribosomal RNAC697U698G699*C581C582G583cWWcWWcWW
105 IL_157D_002157D0.18680B+ARNA (12-mer)C15G16A17*U8A9G10cWWcWWcWW
106 IL_2Q1R_0012Q1R0.17100ARNA (12-mer)C1003G1004A1005*U1008||||2_755A1009||||2_755G1010||||2_755cWWcWWcWW
107 IL_2Q1R_0022Q1R0.17100ARNA (12-mer)C1003||||2_755G1004||||2_755A1005||||2_755*U1008A1009G1010cWWcWWcWW
108 IL_157D_001157D0.14580A+BRNA (12-mer)C3G4A5*U20A21G22cWWcWWcWW
109 IL_3J7A_0383J7A0.19300A SSU rRNAU914G915G916*U886A887A888cWWcWWcWW
110 IL_4W23_0814W230.18530218S ribosomal RNAA1793C1794G1795*C1739C1740U1741ncWW
111 IL_4QCN_0804QCN0.16950A23S Ribosomal RNAC2201U2202G2203*C2130U2131G2132cWWncWwcWW
112 IL_1ZEV_0041ZEV0.19240B+ARNA (18-mer)C7||AU8||AG9||A*C10||AU11||AG12||AcWWncwWcWW
113 IL_1ZEV_0031ZEV0.17700B+ARNA (18-mer)C10||AU11||AG12||A*C7||AU8||AG9||AcWWncwWcWW
114 IL_1ZEV_0061ZEV0.17830A+BRNA (18-mer)C16||AU17||AG18||A*C1||AU2||AG3||AcWWncWwcWW
115 IL_3SZX_0023SZX0.11500Isolated non-canonical cWW pairB+ARNA (19-mer)C10U11G12*C10U11G12cWWncwWcWW
116 IL_4E48_0064E480.08730Isolated non-canonical cWW pairA+BRNA (20-mer)C17U18G19*C22U23G24cWWncWwcWW
117 IL_4JK0_0024JK00.07670BRNA (21-mer)C514||||4_555U515||||4_555G516||||4_555*C508U509G510cWWncwWcWW
118 IL_4JK0_0044JK00.07670BRNA (21-mer)C514U515G516*C508||||4_555U509||||4_555G510||||4_555cWWncwWcWW
119 IL_4KNQ_0024KNQ0.00000Isolated non-canonical cWW pairBRNA (20-mer)C213||||4_555C214||||4_555G215||||4_555*C207C208G209cWWcWW
120 IL_4KNQ_0044KNQ0.00010Isolated non-canonical cWW pairBRNA (20-mer)C213C214G215*C207||||4_555C208||||4_555G209||||4_555cWWcWW
121 IL_3SYW_0023SYW0.11160B+ARNA (19-mer)C10U11G12*C10U11G12cWWncwWcWW
122 IL_3J7A_0493J7A0.14580A SSU rRNAA1117U1118G1119*C1169C1170U1171cWWcWWcWW
123 IL_4QCN_0334QCN0.21830A23S Ribosomal RNAG997A998G999*U1008C1009C1010cWWcWWcWW
124 IL_1ZH5_0011ZH50.19060Isolated non-canonical cWW pairD+CRNA (9-mer)C3U4G5*C3U4G5cWWncWwcWW
125 IL_1ZEV_0051ZEV0.15230B+ARNA (18-mer)C4||AU5||AG6||A*C13||AU14||AG15||AcWWncWwcWW
126 IL_1ZEV_0021ZEV0.21630A+BRNA (18-mer)C4||AU5||AG6||A*C13||AU14||AG15||AcWWcWW
127 IL_3SZX_0033SZX0.21790Isolated non-canonical cWW pairB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
128 IL_4J5V_0054J5V0.20050BRNA (19-mer)C211C212G213*C207||||4_555A208||||4_555G209||||4_555cWWncWWcWW
129 IL_4J5V_0034J5V0.20050BRNA (19-mer)C211||||4_555C212||||4_555G213||||4_555*C207A208G209cWWncWWcWW
130 IL_4BPP_0564BPP0.20750A18S RRNAC1595C1596G1597*C1126A1127G1128cWWncWWacWW
131 IL_3FO4_0013FO40.20780AGuanine riboswitch C74U mutantU25C26G27*C43A44A45cWWcWWacWW
132 IL_1RPU_0011RPU0.26420Isolated non-canonical cWW pairD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
133 IL_3GLP_0023GLP0.22830A+BRNA (8-mer)C5U6G7*C2||AU3||AG4ncWwcWW
134 IL_1UN6_0051UN60.16090Isolated non-canonical cWW pairF5S RIBOSOMAL RNAC95U96G97*C79U80G81cWWncWwcWW
135 IL_3SZX_0013SZX0.17050Isolated non-canonical cWW pairB+ARNA (19-mer)C13U14G15*C7U8G9cWWcWW
136 IL_4E48_0044E480.18710Isolated non-canonical cWW pairA+BRNA (20-mer)C11U12G13*C28U29G30cWWncWwcWW
137 IL_4E48_0024E480.19980Isolated non-canonical cWW pairA+BRNA (20-mer)C5U6G7*C34U35G36cWWcWW
138 IL_4E48_0014E480.19600Isolated non-canonical cWW pairB+ARNA (20-mer)C37U38G39*C2U3G4cWWcWW
139 IL_4E48_0034E480.21630Isolated non-canonical cWW pairB+ARNA (20-mer)C31U32G33*C8U9G10cWWcWW
140 IL_4FNJ_0024FNJ0.21270ARNA (35-MER)C4U5G6*C30U31G32cWWcWW
141 IL_4E59_0014E590.15460Isolated non-canonical cWW pairA+BRNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncBWcWW
142 IL_1VX6_0341VX60.16640A28S ribosomal RNAC1057U1058G1059*C922C923G924cWWcWWcWW
143 IL_4E48_0054E480.24980Isolated non-canonical cWW pairB+ARNA (20-mer)C25U26G27*C14U15G16cWWcWW
144 IL_4BPP_0014BPP0.21920A18S RRNAU596U597A598*U21U22A23cWWcWwcWW
145 IL_4KNQ_0054KNQ0.18700Isolated non-canonical cWW pairBRNA (20-mer)C204||||4_555C205||||4_555G206||||4_555*C216C217G218cWWcwWcWW
146 IL_4KNQ_0014KNQ0.18700Isolated non-canonical cWW pairBRNA (20-mer)C204C205G206*C216||||4_555C217||||4_555G218||||4_555cWWcwWcWW
147 IL_3SYW_0013SYW0.21120A+BRNA (19-mer)C7U8G9*C13U14G15||AcWWcWwcWW
148 IL_3SYW_0033SYW0.21080B+ARNA (19-mer)C7U8G9*C13U14G15||AcWWcWwcWW
149 IL_4JK0_0054JK00.17290BRNA (21-mer)C505||||4_555U506||||4_555G507||||4_555*C517U518G519cWWcWwcWW
150 IL_4JK0_0014JK00.17290BRNA (21-mer)C505U506G507*C517||||4_555U518||||4_555G519||||4_555cWWcWwcWW
151 IL_1ZEV_0011ZEV0.17530A+BRNA (18-mer)C1||AU2||AG3||A*C16||AU17||AG18||AncWWcWWcWwcWW
152 IL_1VW3_0681VW30.16590A21S ribosomal RNAU2201U2202A2203*U2185U2195A2196cWWncWwcWW
153 IL_1U6B_0051U6B0.26510Isolated non-canonical cWW pairB197-MERC100U101U102*A117U118G119cWWcWwcWW
154 IL_2ZKO_0012ZKO0.21530Isolated non-canonical cWW pairC+DRNA (21-mer)U9U10A11*U9U10A11cWWcWW
155 IL_4W21_0374W210.26150528S ribosomal RNAC922C923C924*G740C741G742cWWncBWcWW
156 IL_1VW3_0011VW30.27510A21S ribosomal RNAC3275U3276A3277*U22U23G24cWWcWwcWW
157 IL_4W23_0344W230.21650218S ribosomal RNAG694C695G696*C734C735C736ncBWcWW
158 IL_4TS2_0044TS20.19930Isolated non-canonical cWW pairX+YSpinach aptamer RNA, bimolecular constructG20U21G22*C77U78C79cWWcWwcWW
159 IL_1KFO_0021KFO0.25640Isolated non-canonical cWW pairARNA (19-mer)G11||||8_555A12||||8_555G13||||8_555*C6C7U8cWWcWWcWW
160 IL_1KFO_0031KFO0.25640Isolated non-canonical cWW pairARNA (19-mer)G11A12G13*C6||||8_555C7||||8_555U8||||8_555cWWcWWcWW
161 IL_4W23_0024W230.24370218S ribosomal RNAA519A520A521*U34C35U36cWWcWWcWW
162 IL_1MWL_0041MWL0.24840B+ARNA (22-mer)G26U27C28*G18||AU19C20cWWncWwcWW
163 IL_1MWL_0011MWL0.23540A+BRNA (22-mer)G4U5C6*G40U41C42cWWncWwcWW
164 IL_3TD1_0013TD10.22140A+BRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
165 IL_3TD1_0063TD10.24140B+ARNA (23-mer)G28U29C30*G19U20C21cWWncWwcWW
166 IL_4W21_0244W210.24550528S ribosomal RNAG462A463G464*C691A692C693cWWncWwcWW
167 IL_3U5F_0023U5F0.20820618S rRNAA471U472A473*U35C36U37cWWcWWcWW
168 IL_1FJG_0061FJG0.23340Isolated non-canonical cWW pair (H)A SSU rRNAC67G68G69*C99A101G102cWWcWWcWW
169 IL_4A1B_0484A1B0.32050126S RRNAA1035G1036A1037*U1065A1066U1067ncWWncWWcWW
170 IL_4A1B_0714A1B0.31590126S RRNAA1685G1686C1687*G1812A1813U1814cWWcWWcWW
171 IL_1VW3_0431VW30.25330A21S ribosomal RNAU1486A1487U1488*A1433A1434A1475cWWcWwcWW
172 IL_3U5F_0843U5F0.30360618S rRNAU1650A1651C1652*G1748A1749A1750cWWcWwcWW
173 IL_3J7A_0743J7A0.34970Isolated non-canonical cWW pair (H)A SSU rRNAU1947A1948C1949*G2040A2041A2042cWWcWwcWW
174 IL_4W23_0764W230.32180218S ribosomal RNAU1714A1715C1716*G1817A1818A1819cWWcWwcWW
175 IL_3J7A_0393J7A0.31270A SSU rRNAA910U911U912*A890U891U892cWWcWW
176 IL_1FJG_0581FJG0.39130Isolated non-canonical cWW pair (H)A SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
177 IL_1VW3_0091VW30.30280A21S ribosomal RNAU176A177U178*G200A201A202cWWncwWncWW
178 IL_4CUV_0474CUV0.34020125S RRNAU1039A1040U1041*A1009G1010A1011cWWcWWcWW
179 IL_3U5H_0443U5H0.25690525S rRNAU1039A1040U1041*A1009G1010A1011cWWcWWcWW
180 IL_1VX6_0491VX60.29490A28S ribosomal RNAU1162A1163U1164*A1131G1132A1133cWWcWWcWW
181 IL_4W21_0694W210.33770528S ribosomal RNAU1779A1780U1781*A1749G1750A1751ncWWcWWncWW
182 IL_4CUX_0034CUX0.28900218S RRNAA471U472A473*U35C36U37cWWcWWncWW
183 IL_4BPP_0684BPP0.30010A18S RRNAC1295G1296A1297*U1262G1263G1264cWWcWW
184 IL_4W23_0624W230.28890218S ribosomal RNAC1380G1381A1382*U1347G1348G1349cWWncwWcWW
185 IL_4IOA_0304IOA0.24610Isolated non-canonical cWW pairX LSU rRNAU974C975C976*G963A964G965cWWcWWcWW
186 IL_4W21_0084W210.30981528S ribosomal RNAC124C125C126*G142G144G145
187 IL_3U5F_0363U5F0.34080618S rRNAC646G647G648*C686G687G688cWWcWW
188 IL_3J7A_0833J7A0.252107 tRNAG25C26G27*U40C41C42ncWWncWwncWW
189 IL_4CUV_0304CUV0.27871125S RRNAA755U756C757*G774A775U777cWWcWWcWW
190 IL_4CUX_0154CUX0.31180218S RRNAA206U207U208*A257C258U259ncWWcWWncWW
191 IL_4BPP_0734BPP0.28820A18S RRNAC1323U1324G1325*U1341U1342G1343cWWcWwcWW
192 IL_4IOA_0104IOA0.24950Isolated non-canonical cWW pair (H)X LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
193 IL_1VW3_0151VW30.19180A21S ribosomal RNAA474U475G476*C463C464U465cWWcWWcWW
194 IL_4QCN_0144QCN0.20700A23S Ribosomal RNAA598U599G600*C587C588U589cWWcWWcWW
195 IL_2QBG_0182QBG0.20850B23S rRNAA575U576G577*C564C565U566cWWcWWcWW
196 IL_4BPP_0154BPP0.22300A18S RRNAA201U202U203*A254C255U256cWWcWWcWW
197 IL_3U5F_0153U5F0.24130618S rRNAA257C258U259*A206U207U208cWWcWWcWW
198 IL_4W23_0074W230.37610218S ribosomal RNAG351U352C353*G108U109U110cWWcWwcWW
199 IL_3J7A_0663J7A0.42640A SSU rRNAA1743A1744U1745*A1784C1785U1786cWWcWWcWW
200 IL_1FJG_0441FJG0.42360A SSU rRNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
201 IL_2AW7_0522AW70.41360A16S ribosomal RNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
202 IL_3U5F_0633U5F0.37200618S rRNAG1213U1214C1215*G1448U1449U1450cWWncWwcWW
203 IL_1T0E_0021T0E0.34350Isolated non-canonical cWW pairC+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
204 IL_1ZX7_0081ZX70.36440H+GRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
205 IL_2O3X_0042O3X0.33310Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
206 IL_3U5H_1283U5H0.30690525S rRNAU3280U3281U3282*A3168U3169A3170cWWcWwcWW
207 IL_2O3V_0012O3V0.29440Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
208 IL_3BNQ_0013BNQ0.22340B+AA site of human mitochondrial ribosome, A chainG19U20C21*G5U6C7cWWncWwcWW
209 IL_3U5H_1213U5H0.24630525S rRNAA3040U3041U3042*A3012U3013U3014cWWcWwcWW
210 IL_2O3V_0042O3V0.22390Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
211 IL_4W21_1114W210.33770528S ribosomal RNAA3610A3611C3612*G2889C2890U2891cWWcWWcWW
212 IL_4A1B_0834A1B0.36340126S RRNAA2102A2103C2104*G1964C1965U1966cWWcWWcWW
213 IL_4BPP_0344BPP0.25530A18S RRNAA951A952C953*G618C619U620cWWcWWcWW
214 IL_1YZ9_0011YZ90.27320Isolated non-canonical cWW pairD+CRNA (11-mer)A15C16U17*A4C5U6cWWncBWcWW
215 IL_1YZ9_0021YZ90.25600Isolated non-canonical cWW pairE+FRNA (11-mer)A4C5U6*A15C16U17cWWncBWcWW
216 IL_4CUV_1224CUV0.32130125S RRNAG2918A2919U2920*A2926C2927C2928cWWcWWcWW
217 IL_3U5H_1183U5H0.32240525S rRNAG2918A2919U2920*A2926C2927C2928cWWcWWcWW
218 IL_3MEI_0023MEI0.32940Isolated non-canonical cWW pairA+BRNA (23-mer)G8C9C10*G13C14C15cWWncBWcWW
219 IL_1VX6_1181VX60.33030A28S ribosomal RNAG3277A3278U3279*A3285C3286C3287cWWcWWcWW
220 IL_405D_001405D0.30120B+ARNA (16-mer)A26A27U28*A5C6U7cWWcWWcWW
221 IL_405D_002405D0.29770A+BRNA (16-mer)A10A11U12*A21C22U23cWWcWWcWW
222 IL_3U5F_0343U5F0.31750618S rRNAA973A974C975*G624C625U626cWWcWWcWW
223 IL_3J7A_0283J7A0.33020Isolated non-canonical cWW pair (H)A SSU rRNAA1042A1043C1044*G631C632U633cWWcWWcWW
224 IL_3U5H_0873U5H0.34060525S rRNAA2106A2107C2108*G1940C1941U1942cWWcWWcWW
225 IL_1VX6_0881VX60.31720A28S ribosomal RNAA2399A2400C2401*G2208C2209U2210cWWcWWcWW
226 IL_4CUV_0864CUV0.34470125S RRNAA2106A2107C2108*G1940C1941U1942cWWcWWcWW
227 IL_1ZX7_0021ZX70.34150B+ARNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
228 IL_4W21_1494W210.28670528S ribosomal RNAG4618U4619U4620*A4590U4591C4592cWWcWwcWW
229 IL_1MFQ_0021MFQ0.29110Isolated non-canonical cWW pairA SRP RNAG120U121U122*A228U229C230cWWcWwcWW
230 IL_2FQN_0042FQN0.24080A+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
231 IL_4NGF_0024NGF0.31200Isolated non-canonical cWW pairH+GRNA (17-mer)G7U8C9*G7U8C9cWWncWwcWW
232 IL_1T0D_0021T0D0.29640B+ARNA (16-mer)G24U25C26*G10U11C12cWWcWwcWW
233 IL_1VX6_1221VX60.27370A28S ribosomal RNAG3426U3427U3428*A3398U3399C3400cWWcWwcWW
234 IL_4KYY_0034KYY0.27950Isolated non-canonical cWW pairB+ARNA 17-merG5U6U7*A11U12C13cWWcWwcWW
235 IL_4KYY_0014KYY0.28250Isolated non-canonical cWW pairA+BRNA 17-merG5U6U7*A11U12C13cWWcWwcWW
236 IL_2FQN_0012FQN0.27100B+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
237 IL_3TD0_0063TD00.28230Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
238 IL_2OE5_0012OE50.29680Isolated non-canonical cWW pairA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
239 IL_4K31_0044K310.34460Isolated non-canonical cWW pairB+CRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
240 IL_4K31_0014K310.34320Isolated non-canonical cWW pairC+BRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
241 IL_3BNP_0043BNP0.31400A+BA site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chainG18U19C20*G3U4C5cWWcWwcWW
242 IL_3BNP_0013BNP0.32560B+AA site of human mitochondrial ribosome, B chainG17U18C19*G4U5C6cWWcWwcWW
243 IL_3BNQ_0063BNQ0.33870B+AA site of human mitochondrial ribosome, A chainG5U6C7*G19U20C21cWWcWwcWW
244 IL_3BNT_0013BNT0.30140Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
245 IL_3BNT_0063BNT0.30140Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
246 IL_3BNL_0043BNL0.31660A+BA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
247 IL_3BNL_0013BNL0.29830B+AA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
248 IL_1VX6_1341VX60.24400A28S ribosomal RNAG3775U3776G3777*C3714U3715C3716cWWcWwcWW
249 IL_1O9M_0041O9M0.34500A+BEUBACTERIAL A-SITEG1494U1495C1496*G1405U1406C1407cWWcWwcWW
250 IL_1VX6_0711VX60.25260A28S ribosomal RNAA1768U1769G1770*C2082U2083U2084cWWcWwcWW
251 IL_4A1B_1044A1B0.30390126S RRNAG2775C2776U2777*A2758A2759C2760cWWcWWacWW
252 IL_3U5F_0433U5F0.33931618S rRNAG819U821U822*A850U851C852cWWcWwcWW
253 IL_4FNJ_0014FNJ0.26920ARNA (35-MER)C1U2G3*C33U34G35cWWcWwcWW
254 IL_1MZP_0011MZP0.32190Isolated non-canonical cWW pairBfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
255 IL_3RG5_0013RG50.28430Isolated non-canonical cWW pair (H)ASelenocysteine transfer RNAC66U67U67|||A*A5|||BU6G7cWWcWwcWW
256 IL_4KZD_0034KZD0.30970Isolated non-canonical cWW pairRRNA (84-MER)C66U67C68*G17U18G19cWWcWwcWW
257 IL_1S72_0471S720.317400 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
258 IL_3UMY_0013UMY0.26480Isolated non-canonical cWW pair (H)B LSU rRNAC2179U2180U2181*A2108U2109G2110cWWcWwcWW
259 IL_3U5H_0363U5H0.26520525S rRNAU954U955U956*A965U966A967cWWcWwcWW
260 IL_4A1B_0414A1B0.30460126S RRNAU979U980U981*A990U991A992cWWcWwcWW
261 IL_4CUV_0394CUV0.30310125S RRNAU954U955U956*A965U966A967cWWcWwcWW
262 IL_4CUX_0344CUX0.38090218S RRNAA973A974C975*G624C625U626ncWWcWWcWW
263 IL_4A1B_1154A1B0.34230126S RRNAG2906A2907U2908*A2914C2915C2916cWWcWWcWW
264 IL_4BPP_0024BPP0.36320A18S RRNAU594A595U596*A23C24A25cWWcWWcWW
265 IL_1U9S_0071U9S0.32980Isolated non-canonical cWW pairARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
266 IL_4W23_0324W230.34070218S ribosomal RNAA1030A1031C1032*G673C674U675cWWcWW
267 IL_3U5H_0173U5H0.33120525S rRNAU429U430U431*A628U629A630cWWcWW
268 IL_4BPP_0884BPP0.31210A18S RRNAC1644C1645U1646*A1679A1680G1681cWWncWWacWW
269 IL_4CUX_0914CUX0.38130218S RRNAG1672G1673C1674*G1727A1728C1729cWWncWWcWW
270 IL_4M6D_0114M6D0.33720Isolated non-canonical cWW pairHaptamerG12G13C14*G46A47C48cWWcWWncWW
271 IL_4CUV_0524CUV0.35820125S RRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
272 IL_1VX6_0541VX60.37190A28S ribosomal RNAA1248U1249U1250*A1264C1265U1266cWWcWWcWW
273 IL_3U5H_0513U5H0.37380525S rRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
274 IL_4A1B_0524A1B0.35150126S RRNAA1147U1148U1149*A1163C1164U1165cWWcWWcWW
275 IL_1VX6_0191VX60.34900A28S ribosomal RNAA709C710C711*G436A437U438cWWcWWacWW
276 IL_4CUV_0744CUV0.36400125S RRNAG1661G1662C1663*G1786A1787C1788cWWcWWcWW
277 IL_3U5F_0893U5F0.40760618S rRNAG1672G1673C1674*G1727A1728C1729cWWcWWcWW
278 IL_1FJG_0621FJG0.39180A SSU rRNAG1435U1436C1437*G1464C1465C1466cWWcWWcWW
279 IL_4BPP_0374BPP0.34650A18S RRNAA665A666C667*G641G642U643cWWcWWcWWncWW
280 IL_3J7A_0423J7A0.34061A SSU rRNAA939G940U942*A1023A1024U1025cWWcWWcWW
281 IL_3IVK_0043IVK0.38940Cclass I ligase productG87G88U89*A102A103C104cWWcWWcWW
282 IL_3U5H_0763U5H0.36880525S rRNAG1786A1787C1788*G1661G1662C1663cWWcWWcWW
283 IL_1VX6_0731VX60.38500A28S ribosomal RNAG2008A2009C2010*G1816G1817C1818cWWcWWcWW
284 IL_4M4O_0024M4O0.30430Isolated non-canonical cWW pairBRNA (59-MER)G46A47C48*G12G13C14cWWcWWcWW
285 IL_4IOA_0194IOA0.34050Isolated non-canonical cWW pair (H)X LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
286 IL_4CUV_0264CUV0.39440125S RRNAG792C793U794*G668U669C670cWWcWWcWW
287 IL_3U5H_0223U5H0.40950525S rRNAG792C793U794*G668U669C670cWWcWWcWW
288 IL_4W21_0724W210.27920528S ribosomal RNAG1761C1762C1763*G1769A1770U1771ncWWncWWacWW
289 IL_4R0D_0144R0D0.29030AGroup II catalytic intronA410G411U412*A354A355U356cWWcWWcWW
290 IL_4W23_0474W230.26900218S ribosomal RNAA981G982A983*U943A944U945cWWcWWncWW
291 IL_4CUV_0204CUV0.26900125S RRNAA628U629A630*U429U430U431cWWncWwcWW
292 IL_3TD0_0013TD00.20260Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
293 IL_4BPP_0794BPP0.24710A18S RRNAG1518U1519U1520*A1535U1536C1537cWWcWW
294 IL_3J7A_0723J7A0.24690A SSU rRNAG1939U1940C1941*G2049U2050C2051cWWncWwcWW
295 IL_2AW7_0622AW70.23100A16S ribosomal RNAG1405U1406C1407*G1494U1495C1496cWWncWwcWW
296 IL_3U5F_0823U5F0.27780618S rRNAG1642U1643C1644*G1757U1758C1759cWWcWW
297 IL_4W23_0744W230.32660218S ribosomal RNAG1706U1707C1708*G1826U1827C1828cWWncWW
298 IL_4A1B_0284A1B0.26490126S RRNAG820U821U822*A689U690C691cWWncWwcWW
299 IL_4BPP_0824BPP0.25340A18S RRNAG1614U1615C1616*G1710U1711C1712cWWncWwcWW
300 IL_1FJG_0561FJG0.29430A SSU rRNAG1405U1406C1407*G1494U1495C1496cWWncWwcWW
301 IL_4CUX_0834CUX0.34010218S RRNAG1642U1643C1644*G1757U1758C1759cWWcWW
302 IL_4A1B_0154A1B0.44360126S RRNAG443A444C445*G532G533U534cWWncWWcWW
303 IL_4W21_1374W210.43900528S ribosomal RNAG4401C4402U4403*G4440A4441U4442ncWWncWWancWW
304 IL_1VX6_1101VX60.46960A28S ribosomal RNAG3183C3184U3185*G3222A3223U3224cWWcWWacWW
305 IL_4A1B_1074A1B0.46350126S RRNAG2812C2813U2814*G2851A2852U2853cWWcWWacWW
306 IL_3U5H_1093U5H0.45690525S rRNAG2824C2825U2826*G2863A2864U2865cWWcWWacWW
307 IL_4CUV_0494CUV0.44920125S RRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
308 IL_3U5F_0653U5F0.58300618S rRNAA1234C1235A1236*U1249U1250U1251cWWcWW
309 IL_2AW7_0632AW70.52261A16S ribosomal RNAG1491A1492G1494*C1407A1408C1409ncWWcWW
310 IL_4A1B_0274A1B0.49661126S RRNAC577G578G580*C589A590G591cWWcWW
311 IL_4K31_0034K310.46021Isolated non-canonical cWW pairB+CRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
312 IL_4K31_0024K310.47781Isolated non-canonical cWW pairC+BRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
313 IL_4BPP_0834BPP0.59481A18S RRNAG1707A1708G1710*C1616G1617C1618cWWncWWcWW
314 IL_2QEK_0012QEK0.57421A+BHIV-1 subtype F DIS genomic RNAG7A8G10*C15A16C17cWWcwWcWW
315 IL_1U6B_0011U6B0.56801Isolated non-canonical cWW pairB197-MERG19C20G22*C29A30C31cWWncWWcWW
316 IL_4W21_0874W210.56151528S ribosomal RNAG2342U2344G2345*C2290G2291C2292ncSWcWW
317 IL_4W21_1044W210.52221528S ribosomal RNAG2703C2704G2705*C2710G2712C2713ncwWcWW
318 IL_4QCN_0524QCN0.58201A23S Ribosomal RNAC1604A1605G1607*U1479A1480G1481cWWntHWcWW
319 IL_4W23_0214W230.63560218S ribosomal RNAG437G438A439*U454A455C456cWWcHWcWW
320 IL_3J7A_0363J7A0.56840A SSU rRNAU919A920G921*C881A882A883cWWcWW
321 IL_1O9M_0031O9M0.66431A+BEUBACTERIAL A-SITEG1491A1493G1494*C1407A1408C1409cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC37
CUG*CUG30
CUG*CCG11
AAC*GCU9
GUU*AUC7
CUC*GUGAG6
CCG*CCG6
AUG*CCU6
AUU*ACU6
CAG*CCG5
GGG*CAC5
UUU*AUA5
UUG*CUG4
GAAG*CGC4
CGA*UAG4
CUU*AUG4
UAU*AGA4
GAU*ACC4
GGC*GAC4
GCU*GAU4
CUC*GCGAG3
CAG*CAG3
UUA*UUG3
UUU*AUG3
UGCAU*AUG3
GAGG*CAC3
GUG*CUU3
CCG*CAG3
UUA*UUA3
UAC*GAA3
AAU*ACU3
GAC*GGC3
GAAG*CAC3
AUG*CUU2
GGUG*CGC2
CUAC*GAG2
AUA*UUU2
AGUG*CAU2
ACG*CAU2
GCG*CCU2
GCG*CAU2
GUG*CUC2
GAG*CCU2
AGA*UAU2
AUU*AUU2
CGA*UGG2
GUC*GUU2
ACU*ACU2
GCU*AAC2
CUC*GUG2
GUC*GCC2
GCU*GUC2
AAAG*CGU2
GGG*UGC1
UAC*GGA1
GGU*AUUC1
GGU*AUAC1
CAC*GCAG1
GAC*GCAC1
GAC*GUUU1
UAC*GACG1
AUG*UUU1
AAG*CAU1
GAU*AAC1
CGU*AGUG1
GGG*CUUUC1
UUUC*GUG1
UUAUC*GUG1
CAA*UCG1
UCG*CCG1
UUG*CCG1
CUGC*GAG1
AGG*UAU1
GGG*UAC1
GUG*CCC1
ACG*CUU1
AAA*UGU1
UGG*CAG1
GGAG*CAC1
GGG*CAU1
GCC*GAC1
ACG*UAU1
GAG*CGU1
GCG*CAC1
GAUG*CGC1
UGGG*UAA1
CUA*UCG1
UGG*UAA1
ACG*CCU1
GAG*UCC1
UCG*CAA1
UCA*UCA1
CCC*GCG1
CUA*UUG1
GCG*CCC1
AAA*UCU1
GAG*CAC1
AUA*UCU1
CGG*CAG1
AGC*GAU1
UAU*AAA1
CAU*GGG1
UAU*GAA1
UCU*AUA1
UCC*GAG1
CCC*GCGG1
CGG*CGG1
GCG*UCC1
AUC*GAUU1
CUG*UUG1
ACU*AUU1
GCC*GCC1
GUUU*AUC1
UAU*ACA1
CAC*GCG1
CCU*AAG1
ACC*GAU1
AAC*GGU1
AGCU*AAU1
GGU*AAC1
GCC*GAU1
AGU*AAU1
GAC*GGU1
ACA*UUU1
CGGG*CAG1
GCCG*CAC1
GCG*CGGC1
CAGG*UAG1
GGA*UAC1
UAG*CAA1
Non-Watson-Crick part of the motif
SequenceCounts
U*U114
U*C29
A*C28
G*A25
C*A21
C*C17
A*G13
A*A12
U*UGA6
C*U6
AA*G6
G*G4
AG*A4
U*CGA3
GCA*U3
AA*A3
A*CA2
GU*G2
UU*U2
UA*A2
GU*A2
GG*A2
G*UU1
G*UA1
A*UU1
A*AC1
G*GU1
G*UUU1
UAU*U1
UG*A1
GA*A1
AU*G1
C*CG1
U*AU1
GC*A1
CC*A1
C*GG1

Release history

Release1.18
Date2014-10-07
StatusUpdated, 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_92602.2Only in the parent motif
IL_92602.1
Compare		IL_4CUV_026, IL_4CUV_020, IL_4CUX_091, IL_3KTW_002, IL_3J7A_032, IL_1FJG_010, IL_2AW7_052, IL_4A1B_112, IL_2O3X_004, IL_1NLC_001, IL_1U6B_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_2O3V_001, IL_4IOA_078, IL_1O9M_003, IL_3U5H_109, IL_1S72_047, IL_4J5V_002, IL_4J5V_001, IL_4CUX_069, IL_4J5V_007, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_4KNQ_001, IL_4KNQ_002, IL_1VX6_134, IL_4KNQ_004, IL_4KNQ_005, IL_4IOA_044, IL_3J7A_066, IL_405D_002, IL_405D_001, IL_4CUV_139, IL_1ZH5_001, IL_4CUV_133, IL_1YZ9_001, IL_1VX6_122, IL_1YZ9_002, IL_3J7A_083, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4A1C_009, IL_4E59_001, IL_4CUX_089, IL_4CUV_156, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_1T0E_002, IL_4A1B_041, IL_4CUX_040, IL_3U5H_076, IL_1FJG_056, IL_3U5F_050, IL_1NLC_002, IL_3J7A_079, IL_3J7A_042, IL_4A1B_083, IL_4QCN_079, IL_3J7A_072, IL_3J7A_073, IL_4CUX_015, IL_3U5F_015, IL_3BNL_001, IL_3TD1_006, IL_3J7A_074, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_3BNL_004, IL_3CUN_002, IL_4NGF_002, IL_1FJG_058, IL_1VX6_034, IL_1VX6_115, IL_3TD0_005, IL_2QBG_085, IL_4BPP_001, IL_1VX6_110, IL_4IOA_054, IL_1VX6_118, IL_3J7A_077, IL_4IOA_030, IL_1U6B_005, IL_1VW3_009, IL_3U5H_008, IL_4FNJ_002, IL_2QEK_001, IL_1FJG_044, IL_3U5F_043, IL_1VW3_001, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZX7_008, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_4JK0_005, IL_4CUX_003, IL_3U5H_087, IL_4K31_003, IL_3BNQ_001, IL_1VX6_049, IL_4M4O_001, IL_4J5V_003, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_4E48_002, IL_4BPP_079, IL_4CUV_074, IL_4IOA_104, IL_4A1B_061, IL_4CUV_039, IL_2QBG_020, IL_1MFQ_003, IL_4K31_004, IL_4BPP_037, IL_4IOA_109, IL_4IOA_025, IL_4CUV_086, IL_4KYY_003, IL_4QCN_052, IL_4CUX_034, IL_1MZP_001, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_4JK0_004, IL_3U5F_036, IL_4IOA_091, IL_1VW3_092, IL_3UMY_001, IL_1VX6_054, IL_1VX6_052, IL_4BPP_002, IL_4BPP_068, IL_1VW3_068, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_3U5H_022, IL_3U5H_028, IL_3U5F_002, IL_3U5F_089, IL_1VW3_016, IL_3BNQ_006, IL_2QBG_083, IL_3U5H_017, IL_4CUX_022, IL_4CUX_023, IL_1MFQ_002, IL_3BNP_001, IL_3J7A_028, IL_3D0U_006, IL_3BNP_004, IL_3RG5_001, IL_4TS2_004, IL_3BNT_006, IL_3BNT_001, IL_4QCN_094, IL_3IVK_004, IL_157D_002, IL_4KYY_001, IL_4KZD_003, IL_1MWL_004, IL_4M6D_011, IL_1MWL_001, IL_1T0D_002, IL_3U5F_063, IL_4CUV_118, IL_4BPP_088, IL_4CUV_052, IL_3U5H_036, IL_4AOB_005, IL_2AW7_064, IL_2AW7_063, IL_2AW7_062, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_3J7A_036, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3SYW_001, IL_1VW3_015, IL_157D_001, IL_1FJG_006, IL_3J7A_038, IL_3J7A_039, IL_4QCN_033, IL_3MEI_002, IL_1VX6_073, IL_1VX6_071, IL_1RPU_001, IL_4A1B_015, IL_1VX6_078, IL_2FQN_001, IL_4A1B_071, IL_4CUV_047, IL_1VX6_019, IL_4CUV_049, IL_4A1B_034, IL_4IOA_013, IL_4IOA_010, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_1VX6_006, IL_1VW3_043, IL_3U5F_065, IL_2Q1R_002, IL_3U5F_061, IL_3U5H_044, IL_1S72_024, IL_3U5H_049, IL_4CUX_083, IL_3NJ6_001, IL_3J7A_043, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_4CUX_044, IL_3GLP_002, IL_3NJ6_002, IL_3J7A_049, IL_3GLP_001, IL_4BPP_056, IL_1XJR_003, IL_4QCN_080, IL_3TD0_006, IL_3TD0_001, IL_4CUV_032, IL_4A1B_028, IL_4FNJ_001, IL_4A1B_027, IL_4A1B_024, IL_4CUV_008, IL_1ZX7_002, IL_4BPP_038, IL_4BPP_034, IL_5MSF_001, IL_3U5H_114, IL_4CUV_030, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_1UN6_005, IL_1ZEV_001, IL_3U5H_051, IL_2QBG_034, IL_3U5F_072, IL_2QBG_030, IL_2Q1R_001, IL_4A1B_104, IL_4M4O_002, IL_4QCN_014, IL_4QCN_017, IL_1VX6_088, IL_3J7A_054, IL_3FO4_001, IL_4CUX_073, IL_4JK0_002, IL_4CUV_120, IL_4CUV_122, IL_4JK0_001, IL_1S72_095IL_4BPP_065, IL_4W21_149, IL_4W21_162, IL_4W21_142, IL_4W23_034, IL_4W23_032, IL_4W23_030, IL_3U5F_067, IL_4W21_072, IL_4R0D_014, IL_4W23_074, IL_4W23_047, IL_4W21_037, IL_4W21_031, IL_4W21_111, IL_2AW7_049, IL_4W21_153, IL_4W21_137, IL_4W21_175, IL_4W21_176, IL_4W23_007, IL_4W23_002, IL_4W21_087, IL_4W23_021, IL_4W23_008, IL_4W23_076, IL_4W23_062, IL_4W23_081, IL_4W21_024, IL_4W21_069, IL_4W21_003, IL_4W21_008, IL_4W21_104IL_1VX2_007, IL_1VWW_032, IL_1VX2_002, IL_1VWW_038, IL_1VX2_086, IL_1VWW_074, IL_1VX2_079, IL_1VWW_114, IL_1VWW_143, IL_1VX2_062, IL_1VX2_029, IL_1VWW_165, IL_1VWW_002, IL_2AW7_009, IL_1VWW_024, IL_1VX2_021, IL_2QEK_002, IL_1VWW_156, IL_1VX2_008, IL_1VX2_033, IL_1VX2_031
IL_27005.1
Compare		IL_3U5F_067, IL_4BPP_065, IL_2AW7_049IL_4CUV_026, IL_4CUV_020, IL_3U5H_044, IL_4CUX_091, IL_1VX6_134, IL_4W21_162, IL_1FJG_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4JK0_004, IL_4IOA_078, IL_1O9M_003, IL_3U5H_109, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_4CUX_069, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3J7A_042, IL_4KNQ_001, IL_4KNQ_002, IL_3KTW_002, IL_4KNQ_004, IL_4KNQ_005, IL_1VX6_088, IL_1FJG_056, IL_3J7A_066, IL_157D_002, IL_157D_001, IL_4CUV_139, IL_1ZH5_001, IL_4CUV_133, IL_4W21_111, IL_2FQN_001, IL_1VX6_122, IL_1YZ9_002, IL_3J7A_083, IL_2FQN_004, IL_4CUX_083, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4CUX_089, IL_4CUV_156, IL_3J7A_049, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_3DIR_006, IL_4JK0_001, IL_2O3X_004, IL_4A1B_041, IL_4W21_087, IL_3U5H_076, IL_4W23_047, IL_3U5F_050, IL_4A1B_112, IL_3J7A_079, IL_4BPP_056, IL_4QCN_079, IL_3J7A_072, IL_3J7A_073, IL_4CUX_015, IL_3U5F_015, IL_3BNL_001, IL_3J7A_077, IL_3J7A_074, IL_3SZX_002, IL_4E48_005, IL_4E48_004, IL_3U5H_008, IL_4E48_006, IL_4E48_001, IL_3U5H_017, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_3J7A_054, IL_1VX6_034, IL_1VX6_115, IL_1XJR_003, IL_4BPP_001, IL_4W21_149, IL_2QBG_083, IL_4A1B_028, IL_4IOA_054, IL_3U5F_082, IL_1VX6_118, IL_4W21_142, IL_4BPP_038, IL_1VW3_009, IL_3BNQ_001, IL_4FNJ_002, IL_2QEK_001, IL_4W23_034, IL_1FJG_044, IL_3U5F_043, IL_1VW3_001, IL_4W23_030, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_4W21_072, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_4JK0_002, IL_2O3V_004, IL_3TD0_002, IL_4JK0_005, IL_4CUX_003, IL_3U5H_087, IL_4K31_003, IL_1VX6_049, IL_4QCN_052, IL_4QCN_014, IL_4W21_153, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4CUV_039, IL_4J5V_007, IL_1VW3_016, IL_4CUV_074, IL_4W23_021, IL_4IOA_025, IL_4R0D_014, IL_4KYY_001, IL_4KYY_003, IL_4NGF_002, IL_4CUX_034, IL_4CUV_120, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_4W21_069, IL_4AOB_005, IL_4CUV_008, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_1VX6_052, IL_4BPP_002, IL_4A1C_009, IL_1VW3_068, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VW3_015, IL_4IOA_030, IL_3U5H_028, IL_3U5F_002, IL_3U5F_089, IL_1MFQ_003, IL_3BNQ_006, IL_1VX6_110, IL_1MFQ_002, IL_4CUX_022, IL_4CUX_023, IL_3BNP_001, IL_3J7A_028, IL_3D0U_006, IL_3GLP_001, IL_3BNP_004, IL_4IOA_109, IL_3BNT_006, IL_3BNT_001, IL_4M6D_011, IL_1VX6_019, IL_3IVK_004, IL_405D_002, IL_2QBG_034, IL_4CUV_086, IL_4KZD_003, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4W21_031, IL_4CUV_118, IL_1MZP_001, IL_1UN6_005, IL_3U5H_036, IL_4W23_007, IL_2AW7_064, IL_4W23_002, IL_1S72_095, IL_3U5F_072, IL_1VW3_031, IL_3RW6_004, IL_3NJ6_001, IL_3U5H_133, IL_4W23_008, IL_4CUV_122, IL_3J7A_036, IL_2ZKO_001, IL_3J7A_032, IL_3SYW_003, IL_3SYW_001, IL_4IOA_010, IL_3J7A_038, IL_3J7A_039, IL_4QCN_033, IL_3MEI_002, IL_4W21_003, IL_1VX6_073, IL_1VX6_071, IL_4W21_008, IL_1RPU_001, IL_4A1B_015, IL_1VX6_078, IL_1YZ9_001, IL_1FJG_006, IL_4CUV_047, IL_4QCN_094, IL_4CUV_049, IL_4A1B_034, IL_4IOA_013, IL_3RG5_001, IL_4W21_137, IL_3U5H_128, IL_2OE5_001, IL_4CUV_032, IL_4IOA_019, IL_3U5H_121, IL_1U6B_005, IL_1VX6_006, IL_1VW3_043, IL_1S72_024, IL_3U5F_065, IL_3SZX_001, IL_3U5F_063, IL_4W23_076, IL_3U5F_061, IL_4W23_074, IL_4A1B_071, IL_3TD1_006, IL_2QBG_096, IL_4QCN_017, IL_4W23_032, IL_4CUX_040, IL_4BPP_058, IL_4W21_037, IL_3SZX_003, IL_4CUX_044, IL_1S72_047, IL_3GLP_002, IL_3NJ6_002, IL_4W23_081, IL_4BPP_088, IL_4A1B_083, IL_3TD0_005, IL_4QCN_080, IL_3TD0_006, IL_3TD0_001, IL_1VW3_092, IL_1ZX7_008, IL_1U6B_001, IL_2AW7_063, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_2O3V_001, IL_3J7A_043, IL_4IOA_044, IL_1VX6_054, IL_3U5H_114, IL_4CUV_030, IL_3U5H_116, IL_3U5H_022, IL_3U5H_118, IL_4A1B_107, IL_4CUV_052, IL_4W21_175, IL_3U5H_051, IL_4W23_062, IL_2QBG_085, IL_3BNL_004, IL_4BPP_034, IL_2QBG_030, IL_2Q1R_001, IL_4W21_024, IL_4W21_104, IL_4TS2_004, IL_4A1B_104, IL_1FJG_058, IL_4M4O_002, IL_4CUX_073, IL_1U9S_007, IL_3SYW_002, IL_4IOA_091, IL_4W21_176, IL_3U5H_049, IL_2AW7_062IL_3U5F_074, IL_1VX2_058, IL_2QBG_040, IL_4A1C_001, IL_4CUX_009, IL_4QCN_040, IL_1S72_085, IL_2Y9B_001, IL_4IOA_037

Children motifs

This motif has no children motifs.
Annotations
  • (244)
  • Isolated non-canonical cWW pair (58)
  • Isolated non-canonical cWW pair (H) (16)
  • Isolated non-canonical cWW with bulges (H) (2)
  • Isolated non-canonical cWW with bulges (1)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.43 | Max 1.06
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 23.48 s