IL_413D_001

3D structure

PDB id

413D (explore in PDB, NAKB, or RNA 3D Hub)

Description

A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)

Experimental method

X-RAY DIFFRACTION

Resolution

1.8 Å

Loop

Sequence

UUCG*UUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

413D|1|A|U|6
413D|1|A|U|7
413D|1|A|C|8
413D|1|A|G|9
*
413D|1|A|U|6||||2_555
413D|1|A|U|7||||2_555
413D|1|A|C|8||||2_555
413D|1|A|G|9||||2_555

Current chains

Chain A

RNA (5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3')

Nearby chains