#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_1QBP_0021QBP0.17030Tandem non-canonical cWW pairsB+ARNA (15-mer)U22U23C24G25*U7U8C9G10cWWncWWcWWcWW
2 IL_422D_001422D0.00000Tandem non-canonical cWW pairsA+BRNA (12-mer)U7U8C9G10*U19U20C21G22cWWcWWcWWcWW
3 IL_4ERD_0024ERD0.09750Tandem non-canonical cWW pairsC+DRNA (22-mer)U127U128C141G142*U127U128C141G142cWWcWWcWWcWW
4 IL_1IHA_0011IHA0.15150Tandem non-canonical cWW pairsA+BRNA (9-mer)U3U4C5G6*U3U4C5G6cWWcWWcWWcWW
5 IL_1ICG_0011ICG0.15890Tandem non-canonical cWW pairsA+BRNA (9-mer)U3U4C5G6*U3U4C5G6cWWcWWcWWcWW
6 IL_6L0Y_0026L0Y0.16870Tandem non-canonical cWW pairsARNA (22-mer)U10U11C12G13*U10||||5_555U11||||5_555C12||||5_555G13||||5_555cWWcWWcWWcWW
7 IL_255D_001255D0.16110Tandem non-canonical cWW pairsARNA (12-mer)U5U6C7G8*U5||||2_656U6||||2_656C7||||2_656G8||||2_656cWWcWWcWWcWW
8 IL_413D_001413D0.17210Tandem non-canonical cWW pairsARNA (13-mer)U6U7C8G9*U6||||2_555U7||||2_555C8||||2_555G9||||2_555cWWcWWcWWcWW
9 IL_8CRE_4588CRE0.29711Non-canonical cWW with near cWHCM SSU rRNAA1368G1369A1370G1371*C1324A1326C1327U1328cWWncHWncWwcWW
10 IL_4WF9_1244WF90.34030Tandem non-canonical cWW pairsX LSU rRNAG2217G2218C2219U2220*A2123U2124U2125C2126cWWncWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUCG*UUCG8
AGAG*CUACU1
GGCU*AUUC1
Non-Watson-Crick part of the motif
SequenceCounts
UC*UC8
GA*UAC1
GC*UU1

Release history

Release3.953.963.973.983.99
Date2025-03-262025-04-232025-05-212025-06-182025-07-16
StatusUpdated, 1 parentExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (9)
  • Non-canonical cWW with near cWH (1)
  • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.03 | Avg 0.22 | Max 0.42
    Help

    Coloring options:

    IL_1QBP_002:IL_1QBP_002 = 0IL_1QBP_002:IL_422D_001 = 0.1703IL_1QBP_002:IL_4ERD_002 = 0.1806IL_1QBP_002:IL_1IHA_001 = 0.1588IL_1QBP_002:IL_1ICG_001 = 0.1689IL_1QBP_002:IL_6L0Y_002 = 0.2609IL_1QBP_002:IL_255D_001 = 0.2861IL_1QBP_002:IL_413D_001 = 0.2997IL_1QBP_002:IL_8CRE_458 = 0.3391IL_1QBP_002:IL_4WF9_124 = 0.4227IL_422D_001:IL_1QBP_002 = 0.1703IL_422D_001:IL_422D_001 = 0IL_422D_001:IL_4ERD_002 = 0.0975IL_422D_001:IL_1IHA_001 = 0.1515IL_422D_001:IL_1ICG_001 = 0.1589IL_422D_001:IL_6L0Y_002 = 0.1687IL_422D_001:IL_255D_001 = 0.1611IL_422D_001:IL_413D_001 = 0.1721IL_422D_001:IL_8CRE_458 = 0.2971IL_422D_001:IL_4WF9_124 = 0.3403IL_4ERD_002:IL_1QBP_002 = 0.1806IL_4ERD_002:IL_422D_001 = 0.0975IL_4ERD_002:IL_4ERD_002 = 0IL_4ERD_002:IL_1IHA_001 = 0.1323IL_4ERD_002:IL_1ICG_001 = 0.1414IL_4ERD_002:IL_6L0Y_002 = 0.1799IL_4ERD_002:IL_255D_001 = 0.1955IL_4ERD_002:IL_413D_001 = 0.1971IL_4ERD_002:IL_8CRE_458 = 0.296IL_4ERD_002:IL_4WF9_124 = 0.3444IL_1IHA_001:IL_1QBP_002 = 0.1588IL_1IHA_001:IL_422D_001 = 0.1515IL_1IHA_001:IL_4ERD_002 = 0.1323IL_1IHA_001:IL_1IHA_001 = 0IL_1IHA_001:IL_1ICG_001 = 0.0281IL_1IHA_001:IL_6L0Y_002 = 0.1719IL_1IHA_001:IL_255D_001 = 0.2323IL_1IHA_001:IL_413D_001 = 0.2402IL_1IHA_001:IL_8CRE_458 = 0.2989IL_1IHA_001:IL_4WF9_124 = 0.3423IL_1ICG_001:IL_1QBP_002 = 0.1689IL_1ICG_001:IL_422D_001 = 0.1589IL_1ICG_001:IL_4ERD_002 = 0.1414IL_1ICG_001:IL_1IHA_001 = 0.0281IL_1ICG_001:IL_1ICG_001 = 0IL_1ICG_001:IL_6L0Y_002 = 0.1642IL_1ICG_001:IL_255D_001 = 0.2342IL_1ICG_001:IL_413D_001 = 0.2433IL_1ICG_001:IL_8CRE_458 = 0.3056IL_1ICG_001:IL_4WF9_124 = 0.3456IL_6L0Y_002:IL_1QBP_002 = 0.2609IL_6L0Y_002:IL_422D_001 = 0.1687IL_6L0Y_002:IL_4ERD_002 = 0.1799IL_6L0Y_002:IL_1IHA_001 = 0.1719IL_6L0Y_002:IL_1ICG_001 = 0.1642IL_6L0Y_002:IL_6L0Y_002 = 0IL_6L0Y_002:IL_255D_001 = 0.2271IL_6L0Y_002:IL_413D_001 = 0.2312IL_6L0Y_002:IL_8CRE_458 = 0.3004IL_6L0Y_002:IL_4WF9_124 = 0.329IL_255D_001:IL_1QBP_002 = 0.2861IL_255D_001:IL_422D_001 = 0.1611IL_255D_001:IL_4ERD_002 = 0.1955IL_255D_001:IL_1IHA_001 = 0.2323IL_255D_001:IL_1ICG_001 = 0.2342IL_255D_001:IL_6L0Y_002 = 0.2271IL_255D_001:IL_255D_001 = 0IL_255D_001:IL_413D_001 = 0.0439IL_255D_001:IL_8CRE_458 = 0.333IL_255D_001:IL_4WF9_124 = 0.3573IL_413D_001:IL_1QBP_002 = 0.2997IL_413D_001:IL_422D_001 = 0.1721IL_413D_001:IL_4ERD_002 = 0.1971IL_413D_001:IL_1IHA_001 = 0.2402IL_413D_001:IL_1ICG_001 = 0.2433IL_413D_001:IL_6L0Y_002 = 0.2312IL_413D_001:IL_255D_001 = 0.0439IL_413D_001:IL_413D_001 = 0IL_413D_001:IL_8CRE_458 = 0.3284IL_413D_001:IL_4WF9_124 = 0.3571IL_8CRE_458:IL_1QBP_002 = 0.3391IL_8CRE_458:IL_422D_001 = 0.2971IL_8CRE_458:IL_4ERD_002 = 0.296IL_8CRE_458:IL_1IHA_001 = 0.2989IL_8CRE_458:IL_1ICG_001 = 0.3056IL_8CRE_458:IL_6L0Y_002 = 0.3004IL_8CRE_458:IL_255D_001 = 0.333IL_8CRE_458:IL_413D_001 = 0.3284IL_8CRE_458:IL_8CRE_458 = 0IL_8CRE_458:IL_4WF9_124 = 0.3564IL_4WF9_124:IL_1QBP_002 = 0.4227IL_4WF9_124:IL_422D_001 = 0.3403IL_4WF9_124:IL_4ERD_002 = 0.3444IL_4WF9_124:IL_1IHA_001 = 0.3423IL_4WF9_124:IL_1ICG_001 = 0.3456IL_4WF9_124:IL_6L0Y_002 = 0.329IL_4WF9_124:IL_255D_001 = 0.3573IL_4WF9_124:IL_413D_001 = 0.3571IL_4WF9_124:IL_8CRE_458 = 0.3564IL_4WF9_124:IL_4WF9_124 = 0IL_1QBP_002IL_422D_001IL_4ERD_002IL_1IHA_001IL_1ICG_001IL_6L0Y_002IL_255D_001IL_413D_001IL_8CRE_458IL_4WF9_124Discrepancy0.000.100.200.300.40
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