Motif IL_13404.2 Version IL_13404.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_124 | 4WF9 | 0.3403 | 0 | X | LSU rRNA | G | 2217 | G | 2218 | C | 2219 | U | 2220 | * | A | 2123 | U | 2124 | U | 2125 | C | 2126 | cWW | ncWW | ncWW | ||
| 2 | IL_8CRE_458 | 8CRE | 0.2971 | 1 | CM | SSU rRNA | A | 1368 | G | 1369 | A | 1370 | G | 1371 | * | C | 1324 | A | 1326 | C | 1327 | U | 1328 | cWW | ncHW | ncWw | cWW | |
| 3 | IL_413D_001 | 413D | 0.1721 | 0 | Tandem non-canonical cWW pairs | A | RNA (13-mer) | U | 6 | U | 7 | C | 8 | G | 9 | * | U | 6||||2_555 | U | 7||||2_555 | C | 8||||2_555 | G | 9||||2_555 | cWW | cWW | cWW | cWW |
| 4 | IL_255D_001 | 255D | 0.1611 | 0 | Tandem non-canonical cWW pairs | A | RNA (12-mer) | U | 5 | U | 6 | C | 7 | G | 8 | * | U | 5||||2_656 | U | 6||||2_656 | C | 7||||2_656 | G | 8||||2_656 | cWW | cWW | cWW | cWW |
| 5 | IL_6L0Y_002 | 6L0Y | 0.1687 | 0 | A | RNA (22-mer) | U | 10 | U | 11 | C | 12 | G | 13 | * | U | 10||||5_555 | U | 11||||5_555 | C | 12||||5_555 | G | 13||||5_555 | cWW | cWW | cWW | cWW | |
| 6 | IL_1ICG_001 | 1ICG | 0.1589 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW |
| 7 | IL_1IHA_001 | 1IHA | 0.1515 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW |
| 8 | IL_4ERD_002 | 4ERD | 0.0975 | 0 | Tandem non-canonical cWW pairs | C+D | RNA (22-mer) | U | 127 | U | 128 | C | 141 | G | 142 | * | U | 127 | U | 128 | C | 141 | G | 142 | cWW | cWW | cWW | cWW |
| 9 | IL_422D_001 | 422D | 0.0000 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (12-mer) | U | 7 | U | 8 | C | 9 | G | 10 | * | U | 19 | U | 20 | C | 21 | G | 22 | cWW | cWW | cWW | cWW |
| 10 | IL_1QBP_002 | 1QBP | 0.1703 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (15-mer) | U | 22 | U | 23 | C | 24 | G | 25 | * | U | 7 | U | 8 | C | 9 | G | 10 | cWW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCG*UUCG | 8 |
| GGCU*AUUC | 1 |
| AGAG*CUACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*UC | 8 |
| GC*UU | 1 |
| GA*UAC | 1 |
- Annotations
-
- Tandem non-canonical cWW pairs (7)
- (3)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.22 | Max 0.42
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