IL_480D_001

3D structure

PDB id

480D (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_480D_001 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.1408

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

480D|1|A|C|2652
480D|1|A|U|2653
480D|1|A|A|2654
480D|1|A|G|2655
480D|1|A|U|2656
480D|1|A|A|2657
480D|1|A|C|2658
*
480D|1|A|G|2663
480D|1|A|G|2664
480D|1|A|A|2665
480D|1|A|C|2666
480D|1|A|C|2667
480D|1|A|G|2668

Current chains

Chain A

SARCIN/RICIN DOMAIN FROM 23 S RRNA

Nearby chains