IL_4A1B_026

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGAG*CAAAA

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31555.8

Basepair signature

cWW-R-tSH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4A1B|1|1|U|571
4A1B|1|1|G|572
4A1B|1|1|A|573
4A1B|1|1|G|574
*
4A1B|1|1|C|594
4A1B|1|1|A|595
4A1B|1|1|A|596
4A1B|1|1|A|597
4A1B|1|1|A|598

Current chains

Chain 1

26S RRNA

Nearby chains

Chain F

RPL14

Chain X

RPL18A