IL_4A1B_037

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUGAAG*UGGAAGC

Length

13 nucleotides

Bulged bases

4A1B|1|1|G|885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78744.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4A1B|1|1|G|858
4A1B|1|1|U|859
4A1B|1|1|G|860
4A1B|1|1|A|861
4A1B|1|1|A|862
4A1B|1|1|G|863
*
4A1B|1|1|U|880
4A1B|1|1|G|881
4A1B|1|1|G|882
4A1B|1|1|A|883
4A1B|1|1|A|884
4A1B|1|1|G|885
4A1B|1|1|C|886

Current chains

Chain 1

26S RRNA

Nearby chains