IL_4A1B_062

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCUAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4A1B|1|1|A|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65553.12

Basepair signature

cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4A1B|1|1|C|1414
4A1B|1|1|C|1415
4A1B|1|1|U|1416
4A1B|1|1|A|1417
4A1B|1|1|G|1418
4A1B|1|1|A|1419
4A1B|1|1|A|1420
4A1B|1|1|G|1421
*
4A1B|1|1|U|1441
4A1B|1|1|G|1442
4A1B|1|1|G|1443
4A1B|1|1|A|1444
4A1B|1|1|G|1445

Current chains

Chain 1

26S RRNA

Nearby chains