IL_4A2I_020

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4A2I|1|A|A|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1701

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4A2I|1|A|U|409
4A2I|1|A|G|410
4A2I|1|A|A|411
4A2I|1|A|A|412
4A2I|1|A|G|413
4A2I|1|A|A|414
4A2I|1|A|A|415
4A2I|1|A|G|416
*
4A2I|1|A|U|427
4A2I|1|A|G|428
4A2I|1|A|U|429
4A2I|1|A|A|430
4A2I|1|A|A|431
4A2I|1|A|A|432
4A2I|1|A|G|433

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4