4A2I Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4A2I_001 | No text annotation | ||
| HL_4A2I_002 | No text annotation | ||
| HL_4A2I_003 | GNRA | ||
| HL_4A2I_004 | GNRA | ||
| HL_4A2I_005 | UNCG | ||
| HL_4A2I_006 | GNRA related | ||
| HL_4A2I_007 | GNRA | ||
| HL_4A2I_008 | No text annotation | ||
| HL_4A2I_009 | UNCG | ||
| HL_4A2I_010 | GNRA | ||
| HL_4A2I_011 | UNCG | ||
| HL_4A2I_012 | No text annotation | ||
| HL_4A2I_013 | No text annotation | ||
| HL_4A2I_014 | GNRA-like with tWH | ||
| HL_4A2I_015 | No text annotation | ||
| HL_4A2I_016 | GNRA | ||
| HL_4A2I_017 | No text annotation | ||
| HL_4A2I_018 | No text annotation | ||
| HL_4A2I_019 | GNRA | ||
| HL_4A2I_020 | GNRA | ||
| HL_4A2I_021 | No text annotation | ||
| HL_4A2I_022 | GNRA | ||
| HL_4A2I_023 | No text annotation | ||
| HL_4A2I_024 | GNRA | ||
| HL_4A2I_025 | T-loop related | ||
| HL_4A2I_026 | No text annotation | ||
| HL_4A2I_027 | GNRA | ||
| HL_4A2I_028 | GNRA | ||
| HL_4A2I_029 | T-loop with 3 stacked bulged bases | ||
| HL_4A2I_030 | No text annotation | ||
| HL_4A2I_031 | UNCG | ||
| HL_4A2I_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4A2I_001 | Single bulged G | ||
| IL_4A2I_002 | Single bulged A | ||
| IL_4A2I_003 | No text annotation | ||
| IL_4A2I_004 | Minor groove platform | ||
| IL_4A2I_005 | Multiple bulged bases | ||
| IL_4A2I_006 | Minor groove platform with extra cWW | ||
| IL_4A2I_007 | Minor groove platform | ||
| IL_4A2I_008 | Single bulged G | ||
| IL_4A2I_009 | Isolated non-canonical cWW pair | ||
| IL_4A2I_010 | Minor groove platform related | ||
| IL_4A2I_011 | Isolated cWH basepair | ||
| IL_4A2I_012 | tWH-tWH-tHW-tHW | ||
| IL_4A2I_013 | Minor groove platform | ||
| IL_4A2I_014 | Kink-turn with non-sequential stacking | ||
| IL_4A2I_015 | No text annotation | ||
| IL_4A2I_016 | C-loop | ||
| IL_4A2I_017 | Single bulged U | ||
| IL_4A2I_018 | C-loop | ||
| IL_4A2I_019 | Single bulged G | ||
| IL_4A2I_020 | No text annotation | ||
| IL_4A2I_021 | No text annotation | ||
| IL_4A2I_022 | tSH-tHW-tWW | ||
| IL_4A2I_023 | No text annotation | ||
| IL_4A2I_024 | Single stack bend | ||
| IL_4A2I_025 | Single stack bend | ||
| IL_4A2I_026 | Single bulged A | ||
| IL_4A2I_027 | SSU/LSU pseudoknot | ||
| IL_4A2I_028 | Kink-turn related | ||
| IL_4A2I_029 | No text annotation | ||
| IL_4A2I_030 | tSH-tHW-tHS | ||
| IL_4A2I_031 | Major groove platform | ||
| IL_4A2I_032 | Major groove minor groove platform; mini C-loop | ||
| IL_4A2I_033 | No text annotation | ||
| IL_4A2I_034 | Major groove platform; stack outside cWW | ||
| IL_4A2I_035 | Single stack bend | ||
| IL_4A2I_036 | Tandem non-canonical cWW pairs | ||
| IL_4A2I_069 | Triple non-canonical cWW pairs | ||
| IL_4A2I_037 | No text annotation | ||
| IL_4A2I_038 | Kink-turn | ||
| IL_4A2I_039 | Left turn | ||
| IL_4A2I_040 | tSH-tHW-tHS | ||
| IL_4A2I_041 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4A2I_042 | Single bulged A | ||
| IL_4A2I_043 | Single bulged G | ||
| IL_4A2I_044 | Minor groove platform | ||
| IL_4A2I_045 | No text annotation | ||
| IL_4A2I_046 | Minor groove platform | ||
| IL_4A2I_047 | Single stack bend | ||
| IL_4A2I_048 | Single bulged U | ||
| IL_4A2I_049 | Isolated cWS basepair | ||
| IL_4A2I_050 | Minor groove platform | ||
| IL_4A2I_051 | Single bulged A | ||
| IL_4A2I_052 | Isolated non-canonical cWW pair | ||
| IL_4A2I_053 | No text annotation | ||
| IL_4A2I_054 | Minor groove platform | ||
| IL_4A2I_055 | No text annotation | ||
| IL_4A2I_056 | No text annotation | ||
| IL_4A2I_057 | 180 degree turn | ||
| IL_4A2I_058 | Double sheared with non-canonical cWW | ||
| IL_4A2I_059 | No text annotation | ||
| IL_4A2I_060 | No text annotation | ||
| IL_4A2I_061 | No text annotation | ||
| IL_4A2I_062 | Isolated non-canonical cWW pair | ||
| IL_4A2I_070 | No text annotation | ||
| IL_4A2I_063 | No text annotation | ||
| IL_4A2I_064 | Isolated non-canonical cWW pair | ||
| IL_4A2I_065 | Double sheared | ||
| IL_4A2I_066 | Triple sheared related | ||
| IL_4A2I_067 | Single bulged A | ||
| IL_4A2I_068 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4A2I_010 | No text annotation | ||
| J3_4A2I_014 | No text annotation | ||
| J3_4A2I_011 | No text annotation | ||
| J3_4A2I_015 | No text annotation | ||
| J3_4A2I_012 | No text annotation | ||
| J3_4A2I_001 | No text annotation | ||
| J3_4A2I_002 | No text annotation | ||
| J3_4A2I_003 | No text annotation | ||
| J3_4A2I_004 | No text annotation | ||
| J3_4A2I_005 | No text annotation | ||
| J3_4A2I_016 | No text annotation | ||
| J3_4A2I_006 | No text annotation | ||
| J3_4A2I_007 | No text annotation | ||
| J3_4A2I_017 | No text annotation | ||
| J3_4A2I_008 | No text annotation | ||
| J3_4A2I_018 | No text annotation | ||
| J3_4A2I_009 | No text annotation | ||
| J4_4A2I_001 | No text annotation | ||
| J4_4A2I_002 | No text annotation | ||
| J4_4A2I_003 | No text annotation | ||
| J5_4A2I_001 | No text annotation | ||
| J5_4A2I_002 | No text annotation | ||
| J5_4A2I_003 | No text annotation |
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