IL_4A2I_022

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

4A2I|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0781

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4A2I|1|A|G|446
4A2I|1|A|G|447
4A2I|1|A|A|448
4A2I|1|A|G|449
4A2I|1|A|G|450
*
4A2I|1|A|C|483
4A2I|1|A|G|484
4A2I|1|A|U|485
4A2I|1|A|U|486
4A2I|1|A|A|487
4A2I|1|A|C|488

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4

Chain P

30S RIBOSOMAL PROTEIN S16