IL_4A2I_040

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_040 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0691

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4A2I|1|A|C|779
4A2I|1|A|A|780
4A2I|1|A|A|781
4A2I|1|A|A|782
4A2I|1|A|C|783
*
4A2I|1|A|G|799
4A2I|1|A|G|800
4A2I|1|A|U|801
4A2I|1|A|A|802
4A2I|1|A|G|803

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11

Chain U

30S RIBOSOMAL PROTEIN S21

Chain V

PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA