3D structure

PDB id
4A2I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor
Experimental method
ELECTRON MICROSCOPY
Resolution
16.5 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
4A2I|1|A|G|926
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4A2I_043 not in the Motif Atlas
Homologous match to IL_4LFB_036
Geometric discrepancy: 0.1258
The information below is about IL_4LFB_036
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

4A2I|1|A|G|925
4A2I|1|A|G|926
4A2I|1|A|G|927
*
4A2I|1|A|U|1390
4A2I|1|A|U|1391

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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